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• Assembly Hubs
  Please examine the [https://hgdownload.soe.ucsc.edu/hubs/ GenArk Assembly Hub] collection groups.txt – definitions for track groups on this assembly
  31 KB (4,804 words) - 23:20, 18 November 2022
• Cloud-storage providers and byte-range requests of UCSC big* files
  ...lains why Cloud-'''backup''' providers are not good for storing UCSC track hubs or bigBed/bigWig/bam custom tracks. I'm not 100% sure of everything below, ...at it impacts the performance of all of hgTracks, as currently the slowest track holds up the whole display. Also, potentially, we may get blocked by some o
  4 KB (808 words) - 17:24, 15 March 2019
• Presentations
  ...and Animal Genomes, San Diego - Introduction to the genome browser, GenArk hubs, creating an assembly hub and REST API interface [[Image:PAG30_2023-01-14.p ...Animal Genomes) XXVIII in San Diego, CA: ''Comparative Genomics, Assembly Hubs and New API Data Access on the UCSC Genome Browser''. [[:File:2020_PAG_UCSC
  29 KB (3,991 words) - 23:28, 30 April 2024
• RepeatMasker
  for the nestedRepeats track: # Nested Repeats track.
  10 KB (1,434 words) - 08:09, 1 September 2018
• Genome Browser Software Features (2008-2012)
  * Added bedDetail track type to allow composite trackDb configuration options. ...other than alnum, dash, and underbars to underbars in track names in track hubs.
  46 KB (6,816 words) - 17:37, 14 January 2016
• CSHL 2015 Computational and Comparative Genomics
  used in the ''assembly'' track and thus be available to reference from the genome browser view back A simple track to construct is the '''gc5Base''' track to show GC content
  15 KB (2,132 words) - 22:19, 24 September 2018
• DoBlastzChainNet.pl
  track construction directories, for example: ==Track Hub files==
  34 KB (4,951 words) - 00:04, 24 March 2024
• Genome Browser Software Features
  * Track hubs can now designate their own track groups * Added back the link with hub info to track hub in blue bar
  118 KB (18,164 words) - 16:52, 1 May 2024
• TandemDups
  ...test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ WSB_EiJ] ...-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ&position=chr9:85913016-85915594 chr9:85
  274 KB (32,982 words) - 18:48, 7 February 2018

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