Staphylococcus aureus 12-mer clustering

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Kmer clustering of 182 assemblies of Staphylococcus aureus from RefSeq

genome size statistics
order
count
cluster
id
taxId assembly
date
accessionName
ncbi url
BioSample
ncbi url
BioProject
ncbi url
assembly
name
strain
1 9 451516 2009-03-24 GCF_000017085.1 SAMN00253845 PRJNA19489 ASM1708v1 TCH1516
2 9 451515 2006-02-10 GCF_000013465.1 SAMN02604150 PRJNA16313 ASM1346v1 USA300_FPR3757
3 9 1280 2017-02-16 GCF_002000625.1 SAMN04497606 PRJNA312385 ASM200062v1 USA300-SUR12
4 9 1280 2015-10-23 GCF_001045995.2 SAMN02767311 PRJNA246401 ASM104599v2 HUV05
5 9 1280 2015-10-23 GCF_001046095.2 SAMN02743812 PRJNA246185 ASM104609v2 V2200
6 9 1280 2015-06-08 GCF_001021875.1 SAMN02746692 PRJNA246311 ASM102187v1 M121
7 9 46170 2017-01-18 GCF_001956815.1 SAMN06238073 PRJNA260675 ASM195681v1 USA300_SUR1
8 9 1305598 2013-04-15 GCF_000367745.1 SAMEA2272540 PRJEB1620 ASM36774v1 M1
9 9 1280 2015-10-23 GCF_001045795.2 SAMN02767090 PRJNA246373 ASM104579v2 CA12
10 9 1280 2017-04-13 GCF_002088995.1 SAMN05860146 PRJNA345240 ASM208899v1 C2406
11 9 1280 2017-04-11 GCF_002085525.1 SAMN06677988 PRJNA381486 ASM208552v1 JE2
12 9 1280 2015-06-08 GCF_001021895.1 SAMN02767179 PRJNA246386 ASM102189v1 CA15
13 9 1280 2015-01-06 GCF_000815245.1 SAMN03251896 PRJNA268517 ASM81524v1 27b_MRSA
14 9 1280 2015-01-06 GCF_000815045.1 SAMN03251897 PRJNA268517 ASM81504v1 29b_MRSA
15 9 1280 2015-01-06 GCF_000815125.1 SAMN03251894 PRJNA268517 ASM81512v1 33b
16 9 1280 2015-01-06 GCF_000815205.1 SAMN03251895 PRJNA268517 ASM81520v1 25b_MRSA
17 9 1280 2015-01-06 GCF_000815085.1 SAMN03251898 PRJNA268517 ASM81508v1 31b_MRSA
18 9 1280 2015-01-06 GCF_000815165.1 SAMN03251899 PRJNA268517 ASM81516v1 26b_MRSA
19 9 1280 2014-05-27 GCF_000695875.1 SAMN02777327 PRJNA246435 ASM69587v1 UA-S391_USA300
20 9 1280 2017-02-16 GCF_002000785.1 SAMN04497614 PRJNA312385 ASM200078v1 USA300-SUR20
21 9 1280 2017-02-16 GCF_002000825.1 SAMN04497616 PRJNA312385 ASM200082v1 USA300-SUR22
22 9 1280 2017-02-16 GCF_002000845.1 SAMN04497617 PRJNA312385 ASM200084v1 USA300-SUR23
23 9 1458279 2014-02-12 GCF_000568455.1 SAMN03081531 PRJNA237099 ASM56845v1 USA300-ISMMS1
24 9 1280 2017-02-16 GCF_002000705.1 SAMN04497610 PRJNA312385 ASM200070v1 USA300-SUR16
25 9 1280 2017-02-16 GCF_002000745.1 SAMN04497612 PRJNA312385 ASM200074v1 USA300-SUR18
26 9 1280 2017-02-16 GCF_002000765.1 SAMN04497613 PRJNA312385 ASM200076v1 USA300-SUR19
27 9 1280 2017-02-16 GCF_002000665.1 SAMN04497608 PRJNA312385 ASM200066v1 USA300-SUR14
28 9 1280 2017-02-16 GCF_002000725.1 SAMN04497611 PRJNA312385 ASM200072v1 USA300-SUR17
29 9 1280 2017-02-16 GCF_002000805.1 SAMN04497615 PRJNA312385 ASM200080v1 USA300-SUR21
30 9 1280 2017-02-16 GCF_002000645.1 SAMN04497607 PRJNA312385 ASM200064v1 USA300-SUR13
31 9 46170 2017-11-20 GCF_002786465.1 SAMN07310520 PRJNA392813 ASM278646v1 EDCC5458
32 9 1280 2017-02-16 GCF_002000585.1 SAMN04497604 PRJNA312385 ASM200058v1 USA300-SUR10
33 9 1280 2017-02-16 GCF_002000565.1 SAMN04497603 PRJNA312385 ASM200056v1 USA300-SUR9
34 9 1280 2017-02-16 GCF_002000605.1 SAMN04497605 PRJNA312385 ASM200060v1 USA300-SUR11
35 9 1280 2017-03-31 GCF_002356675.1 SAMD00034144 PRJDB4003 ASM235667v1 JH4899
36 9 1280 2016-07-14 GCF_900092595.1 SAMEA4072170 PRJEB14381 Sa_Newman_UoM Sa_Newman_UoM
37 9 426430 2007-07-02 GCF_000010465.1 SAMD00060913 PRJDA18801 ASM1046v1 Newman
38 9 46170 2017-09-18 GCF_002310395.1 SAMN07629847 PRJNA406184 ASM231039v1 Newman
39 9 426430 2017-09-18 GCF_002310435.1 SAMN07629846 PRJNA406184 ASM231043v1 Newman
40 9 1280 2014-04-11 GCF_000626615.1 SAMN02700075 PRJNA231221 ASM62661v1 NRS 100
41 9 93061 2006-02-13 GCF_000013425.1 SAMN02604235 PRJNA237 ASM1342v1 NCTC 8325
42 9 46170 2016-12-12 GCF_001900185.1 SAMN06062108 PRJNA355085 ASM190018v1 HG001
43 9 93062 2005-05-27 GCF_000012045.1 SAMN02603996 PRJNA238 ASM1204v1 COL
44 9 46170 2016-12-13 GCF_900129335.1 SAMEA17757418 PRJEB18112 PP_HGAG_QV30_2SC_T4 Clinical isolate
45 9 1280 2017-02-16 GCF_002000865.1 SAMN04497618 PRJNA312385 ASM200086v1 USA300-SUR24
46 9 1280 2017-02-16 GCF_002000685.1 SAMN04497609 PRJNA312385 ASM200068v1 USA300-SUR15
47 9 1241616 2015-06-03 GCF_001027105.1 SAMN03651231 PRJNA283471 ASM102710v1 DSM 20231
48 9 1280 2017-09-28 GCF_002386245.1 SAMN07312456 PRJNA231221 ASM238624v1 FDAARGOS_412
49 9 1280 2014-08-29 GCF_000746505.1 SAMN03290990 PRJNA240091 ASM74650v1 2395 USA500
50 9 1280 2016-03-07 GCF_001580515.1 SAMN04254471 PRJNA273427 ASM158051v1 UTSW MRSA 55
51 9 1028799 2012-02-01 GCF_000245495.1 SAMN02603393 PRJNA66591 ASM24549v1 VC40
52 6 1280 2016-09-29 GCF_900096745.1 SAMEA4443152 PRJEB15428 AUS0325 AUS0325
53 6 1280 2016-06-03 GCF_001656075.1 SAMN04939717 PRJNA321000 ASM165607v1 08-02300
54 6 1280 2015-06-03 GCF_001027045.1 SAMN03699895 PRJNA284222 ASM102704v1 RKI4
55 6 1280 2016-04-05 GCF_001611365.1 SAMN04166544 PRJNA298756 ASM161136v1 ST20130942
56 6 1280 2016-04-05 GCF_001611385.1 SAMN04166545 PRJNA298761 ASM161138v1 ST20130943
57 6 46170 2017-03-13 GCF_002025145.1 SAMN06480665 PRJNA378149 ASM202514v1 ATCC 6538
58 6 1280 2015-09-25 GCF_001548295.1 SAMD00039082 PRJDB4160 ASM154829v1 FDA209P
59 6 1280 2017-06-06 GCF_002356655.1 SAMD00041597 PRJDB4003 ASM235665v1 No.10
60 6 1280 2017-10-23 GCF_002633825.1 SAMN03763946 PRJNA243331 ASM263382v1 CFSAN007851
61 6 196620 2004-05-11 GCF_000011265.1 SAMD00061104 PRJNA306 ASM1126v1 MW2
62 6 1280 2017-06-27 GCF_002209325.1 SAMN05520967 PRJNA338099 ASM220932v1 FORC_045
63 6 1280 2015-03-22 GCF_001457495.1 SAMEA2479566 PRJEB6403 NCTC13435 NCTC13435
64 6 1280 2017-11-24 GCF_002795285.1 SAMN05864218 PRJNA345484 ASM279528v1 USA400-0051
65 6 1280 2016-04-05 GCF_001611425.1 SAMN04166389 PRJNA298748 ASM161142v1 ST20130939
66 6 1280 2016-04-05 GCF_001611405.1 SAMN04166246 PRJNA298722 ASM161140v1 ST20130938
67 6 282459 2004-06-25 GCF_000011525.1 SAMEA1705922 PRJNA266 ASM1152v1 MSSA476
68 6 1280 2016-03-07 GCF_001580495.1 SAMN03387935 PRJNA277068 ASM158049v1 FORC_012
69 6 46170 2015-03-24 GCF_001549675.1 SAMD00020284 PRJDB3193 ASM154967v1 TMUS2134
70 6 46170 2015-03-24 GCF_001549655.1 SAMD00020283 PRJDB3193 ASM154965v1 TMUS2126
71 6 1280 2017-07-05 GCF_002214665.1 SAMN05292960 PRJNA326817 ASM221466v1 FORC_040
72 6 1193576 2013-08-30 GCF_000463055.1 SAMN02603420 PRJNA162343 ASM46305v1 CN1
73 6 46170 2015-09-22 GCF_001296985.1 SAMN03267304 PRJNA270571 ASM129698v1 GR2
74 6 1280 2016-11-16 GCF_001879545.1 SAMN04243988 PRJNA301211 ASM187954v1 FORC_026
75 6 1280 2016-04-05 GCF_001611325.1 SAMN04166494 PRJNA298753 ASM161132v1 ST20130940
76 6 1343064 2015-01-20 GCF_000828035.1 SAMN03268345 PRJNA270689 ASM82803v1 DAR4145
77 6 1280 2016-04-05 GCF_001611345.1 SAMN04166543 PRJNA298754 ASM161134v1 ST20130941
78 6 1123523 2011-12-21 GCF_000239235.1 SAMN02603886 PRJNA78269 ASM23923v1 11819-97
79 2 46170 2017-01-30 GCF_001975045.1 SAMN06046106 PRJNA354449 ASM197504v1 UCI 28
80 2 1280 2016-01-31 GCF_900017775.1 SAMEA3733527 PRJEB12333 NZAK3 NZAK3
81 2 158879 2004-05-11 GCF_000009645.1 SAMD00061099 PRJNA264 ASM964v1 N315
82 2 1280 2016-02-11 GCF_001558795.1 SAMN03996304 PRJNA231221 ASM155879v1 FDAARGOS_159
83 2 1280 2016-05-09 GCF_001640885.1 SAMN03742530 PRJNA285271 ASM164088v1 ZJ5499
84 2 1280 2015-04-06 GCF_000969225.1 SAMN03444404 PRJNA279236 ASM96922v1 FCFHV36
85 2 1280 2017-10-23 GCF_002633805.1 SAMN03763945 PRJNA243331 ASM263380v1 CFSAN007850
86 2 418127 2007-09-03 GCF_000010445.1 SAMD00060910 PRJDA18509 ASM1044v1 Mu3
87 2 1280 2017-06-21 GCF_002204555.1 SAMN04571767 PRJNA315882 ASM220455v1 ISU935
88 2 703339 2010-11-05 GCF_000025145.1 SAMN02603764 PRJNA34809 ASM2514v1 04-02981
89 2 681288 2009-10-27 GCF_000024585.1 SAMN02604165 PRJNA39547 ASM2458v1 ED98
90 2 1280 2015-09-11 GCF_001281145.1 SAMN03267711 PRJNA270620 ASM128114v1 SA564
91 2 1074919 2012-10-05 GCF_000382985.1 SAMEA2272299 PRJEA71351 ASM38298v1 ST228
92 2 1280 2016-04-11 GCF_001618305.1 SAMN04590098 PRJNA317948 ASM161830v1 RIVM6519
93 2 158878 2004-05-14 GCF_000009665.1 SAMD00061098 PRJNA263 ASM966v1 Mu50
94 2 1074919 2012-10-05 GCF_000967365.1 SAMEA3283122 PRJEA71347 ASM96736v1 ST228
95 2 1074919 2012-10-05 GCF_000967385.1 SAMEA3283124 PRJEA71353 ASM96738v1 ST228
96 2 1280 2016-01-16 GCF_001548415.1 SAMD00044982 PRJDB4467 ASM154841v1 MI
97 2 1074919 2012-10-05 GCF_000382965.1 SAMEA2272458 PRJEA71349 ASM38296v1 ST228
98 2 1074919 2012-10-05 GCF_000967345.1 SAMEA3283122 PRJEA71345 ASM96734v1 ST228
99 2 1074919 2012-10-05 GCF_000967325.1 SAMEA3283121 PRJEA71343 ASM96732v1 ST228
100 2 1280 2015-09-04 GCF_001278745.1 SAMN03092273 PRJNA294307 ASM127874v1 HOU1444-VR
101 2 46170 2017-01-30 GCF_001975005.1 SAMN06046111 PRJNA354450 ASM197500v1 UCI62
102 2 1074919 2012-10-05 GCF_000967405.1 SAMEA3283125 PRJEA71355 ASM96740v1 ST228
103 2 1074919 2012-10-05 GCF_000383005.1 SAMEA2272502 PRJEA71357 ASM38300v1 ST228
104 2 1280 2016-09-14 GCF_001725965.1 SAMN04046233 PRJNA295337 ASM172596v1 FORC_027
105 2 1280 2017-10-23 GCF_002633865.1 SAMN03763989 PRJNA243331 ASM263386v1 CFSAN007894
106 2 889933 2010-11-24 GCF_000253135.1 SAMEA2271964 PRJEA52833 ASM25313v1 ECT-R 2
107 2 359787 2007-06-28 GCF_000017125.1 SAMN02598344 PRJNA15758 ASM1712v1 JH1
108 2 359786 2007-05-18 GCF_000016805.1 SAMN02598343 PRJNA15757 ASM1680v1 JH9
109 2 1280 2016-05-09 GCF_001640925.1 SAMN03955396 PRJNA300829 ASM164092v1 NCCP14562
110 2 1280 2016-05-09 GCF_001640905.1 SAMN04219574 PRJNA300829 ASM164090v1 NCCP14558
111 3 1406863 2013-10-29 GCF_000485885.1 SAMN02370325 PRJNA222409 ASM48588v1 Z172
112 3 46170 2016-01-15 GCF_001515745.1 SAMN03835492 PRJNA288685 ASM151574v1 HC1340
113 3 1280 2017-04-18 GCF_002097595.1 SAMN04903357 PRJNA319679 ASM209759v1 M92
114 3 46170 2016-01-15 GCF_001515685.1 SAMN03765155 PRJNA286121 ASM151568v1 Be62
115 3 46170 2016-01-15 GCF_001515665.1 SAMN03835466 PRJNA288680 ASM151566v1 Gv51
116 3 46170 2016-01-15 GCF_001515705.1 SAMN03835488 PRJNA288682 ASM151570v1 Gv88
117 3 46170 2016-01-15 GCF_001515765.1 SAMN03835494 PRJNA288686 ASM151576v1 HC1335
118 3 663951 2009-11-25 GCF_000027045.1 SAMEA2272282 PRJEA36647 ASM2704v1 TW20
119 3 546342 2010-08-13 GCF_000145595.1 SAMN02603619 PRJNA29567 ASM14559v1 JKD6008
120 3 1280 2016-05-09 GCF_001641025.1 SAMN04219577 PRJNA300829 ASM164102v1 V521
121 3 1006543 2011-04-19 GCF_000204665.1 SAMN02603905 PRJNA65323 ASM20466v1 T0131
122 3 1280 2017-03-29 GCF_001298325.2 SAMN04008874 PRJNA293604 ASM129832v2 BA01611
123 3 1280 2017-10-02 GCF_002407105.1 SAMN04621062 PRJNA316797 ASM240710v1 NMR08
124 3 1074252 2012-04-23 GCF_000284535.1 SAMEA2272552 PRJEA71279 ASM28453v1 HO 5096 0412
125 3 46170 2014-05-20 GCF_000695215.1 SAMN02767598 PRJNA246435 ASM69521v1 H-EMRSA-15
126 3 46170 2017-11-20 GCF_002786535.1 SAMN07310553 PRJNA392815 ASM278653v1 EDCC5464
127 8 685039 2010-06-21 GCF_000210315.1 SAMN02604166 PRJNA41277 ASM21031v1 ED133
128 8 948563 2017-12-20 GCF_000189455.2 SAMN02469934 PRJNA62081 ASM18945v3 O46
129 8 1280 2017-10-23 GCF_002633765.1 SAMN03763930 PRJNA243331 ASM263376v1 CFSAN007835
130 8 273036 2005-11-24 GCF_000009005.1 SAMEA3138186 PRJNA63 ASM900v1 RF122
131 8 1280 2016-03-21 GCF_001594205.1 SAMN02953006 PRJNA39571 ASM159420v1 MCRF184
132 8 1280 2015-11-17 GCF_001444345.1 SAMN04253017 PRJNA301649 ASM144434v1 XQ
133 8 1280 2017-01-18 GCF_001956755.1 SAMN06200256 PRJNA353940 ASM195675v1 SJTUF_J27
134 8 985006 2011-08-23 GCF_000237265.1 SAMEA2272771 PRJEA62883 ASM23726v1 LGA251
135 8 585143 2013-08-21 GCF_000160335.2 SAMN00103091 PRJNA34891 ASM16033v2 55/2053
136 8 1280 2017-04-13 GCF_002089075.1 SAMN06274062 PRJNA368953 ASM208907v1 GD705
137 8 1280 2017-04-13 GCF_002089115.1 SAMN06274093 PRJNA368957 ASM208911v1 GD1539
138 8 869816 2010-08-23 GCF_000144955.1 SAMN02604217 PRJNA50759 ASM14495v1 JKD6159
139 8 1280 2017-06-20 GCF_002202075.1 SAMN07212543 PRJNA390063 ASM220207v1 Seattle 1945
140 8 46170 2014-09-18 GCF_000756205.1 SAMN03009478 PRJNA259557 ASM75620v1 ATCC 25923
141 8 1280 2017-06-20 GCF_002202095.1 SAMN07212544 PRJNA390063 ASM220209v1 Seattle 1945
142 8 1280 2017-10-23 GCF_002633785.1 SAMN03763942 PRJNA243331 ASM263378v1 CFSAN007847
143 8 1280 2017-04-13 GCF_002089055.1 SAMN06274061 PRJNA368923 ASM208905v1 GD5
144 8 1280 2017-04-13 GCF_002089095.1 SAMN06274241 PRJNA368959 ASM208909v1 GD1677
145 8 282458 2004-06-25 GCF_000011505.1 SAMEA1705935 PRJNA265 ASM1150v1 MRSA252
146 8 46170 2014-11-05 GCF_000772025.1 SAMN03140315 PRJNA259937 ASM77202v1 FORC_001
147 8 1392476 2013-08-30 GCF_000462955.1 SAMN02604264 PRJNA216988 ASM46295v1 6850
148 8 1229492 2012-09-14 GCF_000296595.1 SAMN02603722 PRJNA174226 ASM29659v1 08BA02176
149 8 46170 2017-06-21 GCF_002204575.1 SAMN04571756 PRJNA315880 ASM220457v1 ISU926
150 8 1280 2017-03-13 GCF_002025125.1 SAMN06480668 PRJNA378150 ASM202512v1 08S00974
151 8 46170 2016-11-28 GCF_001887075.1 SAMN04276964 PRJNA302644 ASM188707v1 LA-MRSA ST398
152 8 1280 2015-12-14 GCF_001465635.1 SAMN04325935 PRJNA305475 ASM146563v1 RIVM1295
153 8 1280 2015-12-14 GCF_001465675.1 SAMN04325938 PRJNA305475 ASM146567v1 RIVM1607
154 8 1280 2017-04-13 GCF_002089035.1 SAMN06251153 PRJNA362943 ASM208903v1 293G
155 8 523796 2010-01-07 GCF_000009585.1 SAMEA2272644 PRJEA29427 ASM958v1 ST398
156 8 1280 2015-12-14 GCF_001465755.1 SAMN04325940 PRJNA305475 ASM146575v1 RIVM3897
157 8 1368166 2014-08-04 GCF_000737615.1 SAMN02261725 PRJNA213166 ASM73761v1 SA268
158 8 1280 2017-10-04 GCF_002442975.1 SAMN06703161 PRJNA382289 ASM244297v1 HZW450
159 8 1280 2015-12-03 GCF_001456215.1 SAMN03145755 PRJNA263760 ASM145621v1 MS4
160 8 1155084 2012-04-13 GCF_000258685.1 SAMN02603419 PRJNA66999 ASM25868v1 71193
161 8 1280 2017-10-23 GCF_002633845.1 SAMN03763978 PRJNA243331 ASM263384v1 CFSAN007883
162 8 1201010 2013-09-24 GCF_000470845.1 SAMN00996491 PRJNA167119 ASM47084v1 SA957
163 8 1118959 2011-12-12 GCF_000237125.1 SAMN02603643 PRJNA78007 ASM23712v1 M013
164 8 1323661 2013-06-20 GCF_000412775.1 SAMN02603909 PRJNA197422 ASM41277v1 CA-347
165 8 1280 2016-11-17 GCF_001880265.1 SAMN04263915 PRJNA302097 ASM188026v1 SA40TW
166 8 1280 2017-12-04 GCF_002803885.1 SAMN08024196 PRJNA418239 ASM280388v1 55-99-44
167 8 1194085 2013-09-24 GCF_000470865.1 SAMN02603110 PRJNA167373 ASM47086v1 SA40
168 8 1280 2016-02-17 GCF_900004855.1 SAMEA3432862 PRJEB9500 BB155 BB155
169 8 46170 2015-10-06 GCF_001307235.1 SAMN03777299 PRJNA287201 ASM130723v1 JS395
170 1 1280 2016-10-18 GCF_002355355.1 SAMD00043228 PRJDB4364 ASM235535v1 OC8
171 1 1280 2014-10-30 GCF_000953255.1 SAMEA2743223 PRJEB6577 Staphylococcus_aureus_Sa_ILRI_217 ILRI_Eymole1/1
172 1 1280 2017-05-16 GCF_002140115.1 SAMN04995068 PRJNA321478 ASM214011v1 FORC_039
173 1 1321369 2013-07-05 GCF_000418345.1 SAMN02603524 PRJNA196937 ASM41834v1 Bmb9393
174 7 1280 2014-03-19 GCF_000597965.1 SAMN02690781 PRJNA240093 ASM59796v1 502A
175 7 1280 2016-06-03 GCF_001656045.1 SAMN04939716 PRJNA321000 ASM165604v1 08-02119
176 7 1280 2017-02-06 GCF_001986135.1 SAMN06277866 PRJNA369164 ASM198613v1 SR434
177 7 46170 2015-07-21 GCF_001183705.1 SAMN03787328 PRJNA287576 ASM118370v1 USA300_2014.C01
178 7 1381115 2016-03-08 GCF_000452385.2 SAMN02393830 PRJNA213989 ASM45238v2 Tager 104
179 7 46170 2015-07-21 GCF_001183725.1 SAMN03787340 PRJNA287791 ASM118372v1 USA300_2014.C02
180 7 548473 2010-11-23 GCF_000159535.2 SAMN00002240 PRJNA31539 ASM15953v2 TCH60
181 7 548470 2010-06-17 GCF_000160195.1 SAMN00001499 PRJNA31533 ASM16019v1 MN8
182 7 46170 2014-10-28 GCF_000769575.1 SAMN03144721 PRJNA264181 ASM76957v1 Gv69