TarSyr2 17-way conservation alignment

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Revision as of 18:41, 26 February 2015 by Hiram (talk | contribs) (updated corrected rhiRox1 sequence)
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see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on tarSyr2
% of tarSyr2
matched
(chainLink table)
01tarSyr2Tarsius
syrichta
Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Washington University 2014-11-21 2014-11-22 N/AN/A
02panPan1Pan
paniscus
Bonobo May. 2012 (Max-Planck/panPan1) Max-Planck Institute panpan1 (GCA_000258665.1) 2013-03-05 2013-03-07 2014-12-1652.289%
03panTro4Pan
troglodytes
Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2014-12-1551.284%
04ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2014-12-1351.302%
05gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2014-12-1350.262%
06nomLeu3Nomascus
leucogenys
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2014-12-1350.545%
07macFas5Macaca
fascicularis
Crab-eating macaque Jun 2013 (Macaca_fascicularis_5.0/macFas5) Washington University (WashU) GCA_000364345.1 2013-06-30 2013-06-30 2014-12-1651.814%
08papAnu2Papio
anubis
Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) Baylor College of Medicine 2012-07-22 2012-08-07 2014-12-1551.652%
09rheMac3Macaca
mulatta
Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2014-12-1650.710%
10chlSab2Chlorocebus
sabaeus
Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) Vervet Genomics Consortium GCA_000409795.2 2014-04-10 2014-04-10 2014-12-1651.691%
11hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2014-12-1352.305%
12rhiRox1Rhinopithecus
roxellana
Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) Novogene 2015-02-20 2015-02-18 2015-02-2451.539%
13nasLar1Nasalis
larvatus
Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) Proboscis Monkey Functional Genome Consortium 2014-12-12 2014-12-12 2014-12-1647.164%
14saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2014-12-1548.208%
15micMur1Microcebus
murinus
Mouse lemur Jul. 2007 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 2012-05-04 2014-12-1338.087%
16calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2014-12-1348.629%
17otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2014-12-1544.814%