Upload onto CIRM-01: Difference between revisions

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Example command line tool "lftp":
Example command line tool "lftp":


     $ lftp sftp://maxSftp@cirmdcm.soe.ucsc.edu:6789
     $ lftp sftp://myUsername@cirmdcm.soe.ucsc.edu:6789
     > mirror -R --parallel=10
     > mirror -R --parallel=10



Revision as of 17:42, 20 March 2018

For CIRM groups

  • Ask your UCSC wrangler contact person to set you up with a username and password for the cirmdcm.soe.ucsc.edu sftp upload
  • Use an sftp command line client like lftp or simply sftp and connect to sftp://cirmdcm.soe.ucsc.edu, port 6789, using this username
    • see below for an example
  • If you're unsure which program to use, a good choice is CyberDuck on MacOS, see image below on how to connect using CyberDuck
  • Once you're done with the upload, let your wrangler know

Example command line tool "lftp":

   $ lftp sftp://myUsername@cirmdcm.soe.ucsc.edu:6789
   > mirror -R --parallel=10

-R stands for "reverse", a reverse mirror is lftp-speak for "upload".


Cyberduck screenshot

For UCSC Wranglers

On cirm01, create the user:

   sudo /data/create-user username

To change password of user:

   sudo /data/change-password username

The new user is created with their homedir as:

   /data/sftp/user/incoming

You have read access to those directories.