User generated custom tracks: Difference between revisions

From genomewiki
Jump to navigationJump to search
(initial contents, no links yet)
 
(adding links to customText)
Line 4: Line 4:




Tracks providing CpG island strength predictions and mapping of bona fide CpG islands for the human genome (hg17/hg18). The tracks are based on large-scale epigenome predictions, which give rise to an improved and quantitative annotation of CpG islands. Additional information on these tracks is available from the [http://neighborhood.bioinf.mpi-sb.mpg.de/CpG_islands_revisited/ supplementary website] and from the corresponding paper Bock, C. <I>et al.</I> [http://compbiol.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pcbi.0030110.eor CpG island mapping by epigenome prediction] to appear in PLoS Comput Biol. For prioritization of candidate regions, the quantitative CpG island strength predictions are recommended (hg17/hg18). For genome annotation, three maps of bona fide CpG islands are provided: (i) a highly specific map (hg17/hg18), (ii) a balanced map <B>recommended for most applications</B> (hg17/hg18) and (iii) a highly sensitive map (hg17/hg18). Finally, all tracks can be viewed simultaneously (hg17/hg18), which may take longer to load.
Tracks providing CpG island strength predictions and mapping of bona fide CpG islands for the human genome (hg17/hg18). The tracks are based on large-scale epigenome predictions, which give rise to an improved and quantitative annotation of CpG islands. Additional information on these tracks is available from the [http://neighborhood.bioinf.mpi-sb.mpg.de/CpG_islands_revisited/ supplementary website] and from the corresponding paper Bock, C. <I>et al.</I> [http://compbiol.plosjournals.org/perlserv/?request=get-document&doi=10.1371%2Fjournal.pcbi.0030110.eor CpG island mapping by epigenome prediction] to appear in PLoS Comput Biol. For prioritization of candidate regions, the quantitative CpG island strength predictions are recommended (hg17/hg18). For genome annotation, three maps of bona fide CpG islands are provided: (i) a highly specific map (hg17/hg18), (ii) a balanced map <B>recommended for most applications</B> (hg17/hg18) and (iii) a highly sensitive map (hg17/hg18). Finally, all tracks can be viewed simultaneously (hg17/[http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg18&hgt.customText=http://genomewiki.ucsc.edu/images/9/92/Hg18.customText.UCSC_GGM_All.txt hg18]).

Revision as of 17:54, 19 March 2010

Testing genomewiki hosting bigBed/bigWig custom tracks

Human assembly custom tracks

Tracks providing CpG island strength predictions and mapping of bona fide CpG islands for the human genome (hg17/hg18). The tracks are based on large-scale epigenome predictions, which give rise to an improved and quantitative annotation of CpG islands. Additional information on these tracks is available from the supplementary website and from the corresponding paper Bock, C. et al. CpG island mapping by epigenome prediction to appear in PLoS Comput Biol. For prioritization of candidate regions, the quantitative CpG island strength predictions are recommended (hg17/hg18). For genome annotation, three maps of bona fide CpG islands are provided: (i) a highly specific map (hg17/hg18), (ii) a balanced map recommended for most applications (hg17/hg18) and (iii) a highly sensitive map (hg17/hg18). Finally, all tracks can be viewed simultaneously (hg17/hg18).