XenTro3 conservation alignment: Difference between revisions

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==see also==
<UL>
<LI>X.&nbsp;tropicalis 8-way [[XenTro3 Genome size statistics]]</LI>
<LI>X.&nbsp;tropicalis 8-way [[XenTro3 conservation lastz parameters]]</LI>
<LI>all other [[UCSC Multiple Alignments]]</LI>
</UL>
==see also==
==see also==


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   <TD ALIGN=RIGHT>2010-11-04</TD>
   <TD ALIGN=RIGHT>2010-11-04</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD ALIGN=RIGHT>N/A</TD>
   <TD>2011-09-23</TD><TD ALIGN=RIGHT>3.120%</TD>
   <TD>2011-09-28</TD><TD ALIGN=RIGHT>4.203%</TD>
</TR><TR>
</TR><TR>
   <TH>[http://www.broadinstitute.org/mammals/opossum 05]</TH><TH>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>
   <TH>[http://www.broadinstitute.org/mammals/opossum 05]</TH><TH>[http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=monDom5 monDom5]</TH><TD>[http://www.ncbi.nlm.nih.gov/Traces/wgs/?val=AAFR03 Monodelphis<BR>domestica]</TD><TD>Opossum</TD>

Latest revision as of 17:17, 28 September 2011

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-test
browser
Scientific name/
assembly information
Common
name
assembly date source
version
Repeat
Masker
Window
Masker
chain
on xenTro3
% of xenTro3
matched
(chainLink table)
01xenTro3Xenopus
tropicalis
X. tropicalis Nov. 2009 (JGI 4.2/xenTro3) US DOE Joint Genome Institute (JGI-PGF) (GCA_000004195.1) 2011-09-08 2011-09-08 N/AN/A
02anoCar2Anolis
carolinensis
Lizard May 2010 (Broad AnoCar2.0/anoCar2) Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) 2011-04-12 2011-04-13 2011-09-206.775%
03galGal3Gallus
gallus
Chicken May 2006 (WUGSC 2.1/galGal3) Chicken Genome Sequencing Consortium May 2006 release 2009-08-15 2007-01-02 2011-09-204.730%
04melGal1Meleagris
gallopavo
Turkey Dec. 2009 (TGC Turkey_2.01/melGal1) TGC (NCBI Project ID: 10805, Accession: GCA_000146605.1) 2010-11-04 N/A 2011-09-284.203%
05monDom5Monodelphis
domestica
Opossum Oct. 2006 (Broad/monDom5) Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) 2009-08-14 2009-08-14 2011-09-235.492%
06rn4Rattus
norvegicus
Rat Nov. 2004 (Baylor 3.4/rn4) Baylor HGSC v. 3.4 2009-08-15 N/A 2011-09-235.216%
07mm9Mus
musculus
Mouse July 2007 (NCBI37/mm9) NCBI Build 37 2009-08-14 N/A 2011-09-216.609%
08hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A 2011-09-216.694%
09danRer7Danio
rerio
Zebrafish Jul. 2010 (Zv9/danRer7) Wellcome Trust Sanger Institute Zv9 (GCA_000002035.2) 2010-12-03 N/A 2011-09-217.107%