User contributions for Rhead
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5 April 2013
- 22:3422:34, 5 April 2013 diff hist +151 Outdated instructions for releasing an assembly →Check that common keys between tables are in sync: added a check for times
- 22:2622:26, 5 April 2013 diff hist +132 Outdated instructions for releasing an assembly →Check that it is not symlink on hgnfs1, that there is only one file, and is not in a subdirectory: pointed out that you can check whether a file is a symlink on hgnfs1 by looking at it on hgwbeta
- 00:2200:22, 5 April 2013 diff hist −1 CBSE citation format removed confusing period after PMID and PMCID
- 00:2100:21, 5 April 2013 diff hist −1 CBSE citation format →Basic format: whoops, no period needed
4 April 2013
- 22:3722:37, 4 April 2013 diff hist +17 CBSE citation format →Basic format: added PMID to basic format example
22 March 2013
- 23:1223:12, 22 March 2013 diff hist −177 Outdated instructions for releasing an assembly →genomeClade and gdbPdb: got rid of gdbPdb reference and reworded
- 23:0823:08, 22 March 2013 diff hist −67 Outdated instructions for releasing an assembly →blatServers: reword
- 22:2522:25, 22 March 2013 diff hist −65 Outdated instructions for releasing an assembly →Push the database and tables from hgwdev to hgwbeta: removed instruction to drop user-specific trackDb and hgFindSpec tables when the list comes from the pushQ
20 March 2013
- 23:4223:42, 20 March 2013 diff hist +212 QAing UCSC Genes →joinerCheck: added note to make sure kg{N}ToKg{N+1} is in all.joiner
13 March 2013
- 17:5417:54, 13 March 2013 diff hist +211 Pushing trackDb →Files: Added push of cv.ra to hgdownload, as requested in http://redmine.soe.ucsc.edu/issues/10346.
24 January 2013
- 18:4218:42, 24 January 2013 diff hist +52 Creating a pushQ Entry No edit summary
4 December 2012
- 01:2001:20, 4 December 2012 diff hist −42 CGI testing responsibilities →Brooke: moved hgLogin to the "test only if it has changed" category, per Chin.
21 November 2012
- 19:1419:14, 21 November 2012 diff hist +188 Outdated instructions for releasing an assembly →Double-check /gbdb files: added note about using "ls -lL" to see timestamps
20 November 2012
- 19:1019:10, 20 November 2012 diff hist +51 Outdated instructions for releasing an assembly →Update hgcentral: clarified note about updating defaultDb
6 November 2012
- 19:3219:32, 6 November 2012 diff hist +128 Outdated instructions for releasing an assembly →Adjust the release log in main pushQ: added note about consensus on not listing downloads
15 October 2012
- 19:0919:09, 15 October 2012 diff hist +278 Ensembl QA No edit summary
11 October 2012
- 19:3519:35, 11 October 2012 diff hist +8 m Minimal browser fixed path to organism.lst
- 19:3019:30, 11 October 2012 diff hist +7 m Minimal browser No edit summary
- 19:3019:30, 11 October 2012 diff hist +58 Minimal browser changed genbank tracks required per discussion w/ braney and jim (also http://redmine.soe.ucsc.edu/issues/7668)
8 October 2012
- 21:3221:32, 8 October 2012 diff hist +58 Minimal browser added categories
- 21:3121:31, 8 October 2012 diff hist −69 Checking RR status through hgTracksRandom removed the "training" categories from this page, since most people don't need to worry about hgTracksRandom
5 October 2012
- 23:3623:36, 5 October 2012 diff hist +54 GenBank QA →Other checks: linked to minimal browser page
- 01:2001:20, 5 October 2012 diff hist −72 New track checklist took out pre-QA labels
12 September 2012
- 18:1718:17, 12 September 2012 diff hist +99 Checking RR status through hgTracksRandom added link to cacti graphs, fixed a typo, added greg to the crontab snippet
29 August 2012
- 23:5123:51, 29 August 2012 diff hist −10 CGI testing responsibilities removed "tests and" from "tests and tracks issues for hgTracks" -- the testing is part of the hgTracks tester's job
- 23:5023:50, 29 August 2012 diff hist +95 CGI testing responsibilities made it more clear that hgTracks needs to be tested every time
- 00:1000:10, 29 August 2012 diff hist +109 Ensembl QA clarified the moving of lines in the trackVersion table based on steve, hiram, and pauline's input
28 August 2012
- 23:5723:57, 28 August 2012 diff hist +241 Outdated instructions for releasing an assembly added note to push hgFixed tables
24 August 2012
- 03:1203:12, 24 August 2012 diff hist 0 Outdated instructions for releasing an assembly →Update hgcentralbeta: moved liftOverChain bit after defaultDb bit
18 August 2012
- 00:4100:41, 18 August 2012 diff hist +89 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added a link to Wellcome's interactive tree of life
17 August 2012
- 23:1423:14, 17 August 2012 diff hist +159 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: more wikipedia links
- 23:0423:04, 17 August 2012 diff hist +108 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added taxonomy browser back. It's not useless. :)
- 22:5722:57, 17 August 2012 diff hist +169 Conservation Track QA →Make a list of all organisms for which there are nets & chains and put them in phylogenetic order: added links to relevant wikipedia pages
- 19:4719:47, 17 August 2012 diff hist +111 Details pages -- conventions added note that SOE links should use ".soe." instead of ".cse." (per Jorge)
- 00:1800:18, 17 August 2012 diff hist +6 Conservation Track QA took out reference to NCBI taxonomy browser after having trouble with it (e.g., human, chimp, and gorilla all appear to be at same level but shouldn't be)
16 August 2012
- 22:4722:47, 16 August 2012 diff hist +132 GenBank QA →Tracks: added location of genbank counts file
- 19:1119:11, 16 August 2012 diff hist +37 Conservation Track QA moved instruction to check the maf file annotation types agains the display to "things we used to do"
- 02:4002:40, 16 August 2012 diff hist +220 GenBank QA added note to compare current tracks to those on a previous assembly, if available
15 August 2012
- 21:4721:47, 15 August 2012 diff hist −3 Genbank updates changed make command, per braney current
26 July 2012
- 18:3318:33, 26 July 2012 diff hist +80 Static Page Protocol →Files Destined for the Round Robin and Mirrors (Public Documents): added note about gitu
- 03:0203:02, 26 July 2012 diff hist +335 Static Page Protocol →Files Destined for the Round Robin and Mirrors (Public Documents): added note about using FIND=find, noted in redmine #8410
2 July 2012
- 22:3322:33, 2 July 2012 diff hist −155 Genbank updates Removed instructions to delete from /cluster/data/genbank/data/ftp (per Braney). Made the instructions generic for enabling and disabling.
13 June 2012
- 19:3119:31, 13 June 2012 diff hist −20 Outdated instructions for releasing an assembly →Push the database and tables from hgwdev to hgwbeta: removed another instruction to leave out tableDescriptions table when pushing from dev to beta
- 19:2819:28, 13 June 2012 diff hist −18 Outdated instructions for releasing an assembly →Push the database and tables from hgwdev to hgwbeta: took out instruction to remove tableDescriptions
7 June 2012
- 02:3602:36, 7 June 2012 diff hist +147 CGI Testing added Cricket's suggestion for using the CSHL Long RNA Seq track as a stress test track
25 May 2012
- 21:2521:25, 25 May 2012 diff hist +18 Post-Release-Checklist →UniProtKB: changed the bit about running makeUniProtFile.csh in a specific directory. RM#7308.
14 May 2012
- 23:1223:12, 14 May 2012 diff hist +3 Outdated instructions for releasing an assembly →Push image file to hgwbeta and rr: changed to specify push from beta to rr, not dev
10 May 2012
- 21:2621:26, 10 May 2012 diff hist +305 Updating blat servers added note to notify mirrors
23 April 2012
- 20:4320:43, 23 April 2012 diff hist −10 Outdated instructions for releasing an assembly moved pressing the done button in the push queue to the end
- 20:1920:19, 23 April 2012 diff hist 0 Outdated instructions for releasing an assembly moved check for phylogenetic order to staging section