User contributions for Chmalee
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3 May 2021
2 March 2021
- 01:2001:20, 2 March 2021 diff hist +103 CGI Build Process →Genome Browser in a Box: Note additional "notSelf" update needed that gbibCoreUpdateBeta is performed
1 March 2021
- 20:3320:33, 1 March 2021 diff hist +48 CGI Build Process →Genome Browser in a Box: Adding note to update the update script before running the cgi update
- 17:4817:48, 1 March 2021 diff hist +13 CGI Build Process →Genome Browser in a Box: Clearly separating old style script gbib update procedure from current manual steps
16 October 2020
- 17:2817:28, 16 October 2020 diff hist +2,004 N Related Tracks Creating Page about relatedTracks section of hgc/hgTrackUi current
2 October 2020
- 18:0118:01, 2 October 2020 diff hist +597 Otto Tracks →Overview
22 September 2020
- 15:3915:39, 22 September 2020 diff hist +1,069 Otto Tracks Add section on bigBed otto tracks
16 April 2020
- 15:2515:25, 16 April 2020 diff hist −12 Demo sandbox No edit summary
1 February 2019
- 19:4019:40, 1 February 2019 diff hist +25 GBiC Testing No edit summary
19 March 2018
- 20:2520:25, 19 March 2018 diff hist +2,347 Installing and testing previous CGI versions Adding some formatting and information about TrackCheck
- 17:5717:57, 19 March 2018 diff hist +2,269 N Installing and testing previous CGI versions Running a VM with old source code
17 January 2018
- 16:5116:51, 17 January 2018 diff hist +94 m Push Shepherd Responsibilities →Push to rest of the RR, hgwbeta-public, and euronode: Adding section about checking each rr machine individually
7 December 2017
- 21:5721:57, 7 December 2017 diff hist −9 m Push Shepherd Responsibilities →tableDescriptions
- 21:5721:57, 7 December 2017 diff hist +10 m Push Shepherd Responsibilities →tableDescriptions: test edit after upgrade
5 December 2017
- 17:0017:00, 5 December 2017 diff hist +133 m Outdated instructions for releasing an assembly →Make sure no tables need to be repushed from hgwdev to hgwbeta: Adding awk for extracting tables needing to be repushed
15 November 2017
- 20:1020:10, 15 November 2017 diff hist +54 m GenBank QA →doGenbankTests: Don't worry about gbSanity anymore.
- 20:0920:09, 15 November 2017 diff hist −89 m Outdated instructions for releasing an assembly →Review all tracks in the sub-pushQ: Removing gbSanity check after Braney said not to do it anymore.
2 November 2017
- 17:1817:18, 2 November 2017 diff hist +5 m Outdated instructions for releasing an assembly →Turn on GenBank updates
- 17:1617:16, 2 November 2017 diff hist +3 m Outdated instructions for releasing an assembly →Turn on genbank updates on the RR
- 17:1517:15, 2 November 2017 diff hist +74 m Outdated instructions for releasing an assembly →Check that Genbank is running on the RR: Genbank updates run once a week now on the rr
1 November 2017
- 20:5820:58, 1 November 2017 diff hist −281 m Outdated instructions for releasing an assembly →Turn on genbank updates on the RR: Braney says we don't need to tell him to reinstall binaries anymore.
25 October 2017
- 15:0815:08, 25 October 2017 diff hist +149 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Organism image check: Adding steps to get a new image to show up on dev. They require the file to be committed or make will not pick them up.
- 15:0415:04, 25 October 2017 diff hist −19 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default tracks: Fixing typo introduced while fixing last typo
- 15:0315:03, 25 October 2017 diff hist +91 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default tracks: Fixing some typos in the default position editing trackDb steps
- 14:5914:59, 25 October 2017 diff hist +235 m Assembly QA Part 1 DEV Steps →Dev: Check that BLAT Server is running: Giving alternative to copyHgcentral program since it creates way too many temporary files
- 14:5614:56, 25 October 2017 diff hist +112 m Assembly QA Part 1 DEV Steps →Dev: Gateway: Check default position: Changing beta->dev and giving example mysql command to update default position
4 October 2017
- 22:4122:41, 4 October 2017 diff hist 0 m Big Bed/Wig QA →featureBits: woops said featureBits was faster when it's actually slower
- 22:4022:40, 4 October 2017 diff hist +820 m Big Bed/Wig QA →validateFiles: Adding example validateFiles loop for checking many bigBeds at once
3 October 2017
- 22:5022:50, 3 October 2017 diff hist +1,134 m Big Bed/Wig QA →featureBits: adding faster awk command in place of featureBits
25 September 2017
- 22:0922:09, 25 September 2017 diff hist +25 m Big Bed/Wig QA →positionalTblCheck and checkTableCoords
- 22:0822:08, 25 September 2017 diff hist +196 m Big Bed/Wig QA →positionalTblCheck: bedtoBigBed checks sorting and valid positions
- 22:0722:07, 25 September 2017 diff hist −744 m Big Bed/Wig QA →checkTableCoords: Removing checkTableCoords section
- 20:4120:41, 25 September 2017 diff hist +26 m Crispr QA Adding this page to browser qa page
- 19:2219:22, 25 September 2017 diff hist +3,493 Big Bed/Wig QA →QA-ing bigBed/bigWig tracks: Adding notes about getting some bed statistics to replicate standard QA
22 September 2017
- 21:1021:10, 22 September 2017 diff hist +357 m New track checklist →FeatureBits and Gaps: woops forgot loop for more than one bed file
- 21:0921:09, 22 September 2017 diff hist +580 m New track checklist →FeatureBits and Gaps: Adding some featureBits caveats
1 September 2017
- 00:0300:03, 1 September 2017 diff hist +139 m Crispr QA →Special QA notes
31 August 2017
- 23:4323:43, 31 August 2017 diff hist +16 m New track checklist →Track type-specific QA: Adding link to crispr qa page
- 23:4123:41, 31 August 2017 diff hist 0 Crispr QA →Special QA notes
- 23:4023:40, 31 August 2017 diff hist −1 Crispr QA →Special notes about normal QA checks
- 23:3323:33, 31 August 2017 diff hist +3 Crispr QA →Special notes about normal QA checks
- 23:3323:33, 31 August 2017 diff hist +67 m Crispr QA →Special notes about normal QA checks
- 23:3223:32, 31 August 2017 diff hist +5,170 N Crispr QA First pass at Crispr track QA page
25 August 2017
- 18:0318:03, 25 August 2017 diff hist +4 m Monitoring Tasks No edit summary
21 July 2017
- 18:3618:36, 21 July 2017 diff hist +16 m Public Hub QA →1) Rebuild and push hub search files and tables
- 18:1818:18, 21 July 2017 diff hist +393 Public Hub QA →1) Rebuild and push hub search files and tables: Updating hub push mechanism, now a 3 part push process instead of just from dev to beta.
22 June 2017
- 20:4620:46, 22 June 2017 diff hist +446 Public Hub QA separating beta and rr steps for search files/table
- 20:0020:00, 22 June 2017 diff hist +88 Public Hub QA →Push to the RR: updating trash directories for hub searching
21 June 2017
- 23:0323:03, 21 June 2017 diff hist +264 Public Hub QA →Push to the RR: Updating steps for pushing hub search after new procedure. Please note that hgwbeta udcCache location has not been finalized as of this edit.
24 May 2017
- 22:0422:04, 24 May 2017 diff hist −1 m Assembly QA Part 4 RR Steps →RR: Check that tables don't need to be re-pushed: edit for qa presentation
