Hg19 Andy's alignment notes: Difference between revisions

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Line 17: Line 17:
| 10M
| 10M
| 100  
| 100  
| done (2009-05-31)
| ...
|-
|-
| Cat
| Cat
| felCat3
| felCat3
| 2009-05-14
| 2009-05-14
| 10M
| 20M
| 10M
| 10M
| 300
| 300
| needs swap (2009-06-02)
| ...
|-
|-
| Guinea Pig
| Guinea Pig
| cavPor3
| cavPor3
| 2009-05-14
| 2009-05-14
| 10M
| 20M
| 10M
| 10M
| 100
| 100
| needs swap (2009-06-02)
| ...
|-
|-
| Cow
| Cow
| bosTau4
| bosTau4
| 2009-05-21
| 2009-05-21
| 10M
| 20M
| 10M
| 10M
| 300
| 300
| running syntenic nets, needs swap (2009-06-02)
| ...
|-
|-
| Megabat
| Megabat
| pteVam1
| pteVam1
| 2009-05-21
| 2009-05-21
| 10M
| 20M
| 10M
| 10M
| 200
| 200
| done (2009-06-01)
| ...
|-  
|-  
| Horse
| Horse
| equCab2
| equCab2
| 2009-05-21
| 2009-05-21
| 10M
| 20M
| 10M
| 10M
| 300
| 300
| needs swap (2009-06-02)
| ...
|-  
|-  
| Alpaca
| Alpaca
Line 65: Line 65:
| 10M
| 10M
| 300
| 300
| running recip best (2009-06-02)
| ...
|-  
|-  
| Microbat
| Microbat
Line 73: Line 73:
| 10M
| 10M
| 300
| 300
| running recip best (2009-06-02)
| ...
|-  
|-  
| Dolphin
| Dolphin
| turTru1
| turTru1
| 2009-05-21
| 2009-05-21
| 10M
| 20M
| 10M  
| 10M  
| 200
| 200
| running recip best (2009-06-02)
| ...
|-
|-
| Sloth
| Sloth
Line 89: Line 89:
| 10M
| 10M
| 300
| 300
| running recip best (2009-06-02)
| ...
|-  
|-  
| Wallaby
| Wallaby
| macEug1
| macEug1
| 2009-05-21
| 2009-05-21
| 20M
| 10M
| 20M
| 5M
| 200
| 1000
| running recip best (2009-06-02)
| done (2009-06-03)
|}
|}

Latest revision as of 16:39, 4 June 2009

  • everything run with -noLoadChainSplit -chainMinScore=3000 -chainLinearGap=medium
Species Database Started SEQ1_CHUNK SEQ2_CHUNK SEQ2_LIMIT Status
Squirrel speTri1 2009-05-14 10M 10M 100 ...
Cat felCat3 2009-05-14 20M 10M 300 ...
Guinea Pig cavPor3 2009-05-14 20M 10M 100 ...
Cow bosTau4 2009-05-21 20M 10M 300 ...
Megabat pteVam1 2009-05-21 20M 10M 200 ...
Horse equCab2 2009-05-21 20M 10M 300 ...
Alpaca vicPac1 2009-05-21 20M 10M 300 ...
Microbat myoLuc1 2009-05-21 20M 10M 300 ...
Dolphin turTru1 2009-05-21 20M 10M 200 ...
Sloth choHof1 2009-05-21 20M 10M 300 ...
Wallaby macEug1 2009-05-21 10M 5M 1000 done (2009-06-03)