Ensembl compara: Difference between revisions
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[http://www.ensembl.org/info/docs/api/compara/compara_schema.html Documentation on Ensembl server] | [http://www.ensembl.org/info/docs/api/compara/compara_schema.html Documentation on Ensembl server] | ||
* genome_db: species in this database | * '''genome_db''': All species in this database | ||
* There are two different types of homologies: protein and genomic | * There are two different types of homologies: protein and genomic | ||
** Genomic homologies: | ** Genomic homologies: | ||
Revision as of 09:51, 29 October 2009
Documentation on Ensembl server
- genome_db: All species in this database
- There are two different types of homologies: protein and genomic
- Genomic homologies:
- Protein homologies:
- Main table homology: A homology is located on a tree, obtained with an (alignment/phylogenetic) method, based on a set of species
- A homology.description can be ortholog or paralog and one-to-one or one-to-many, see Ensembl Doc, but there are also putative_gene_splits, between_species_paralogs and other_paralog
