GorGor3 conservation alignment

From genomewiki
Revision as of 21:34, 18 November 2011 by Hiram (talk | contribs) (initial contents from the dbDb.sh script)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date source
version
Repeat
Masker
Window
Masker
chain
on gorGor3
% of gorGor3
matched
(chainLink table)
01gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 N/A N/AN/A
02panTro3Pan
troglodytes
Chimp Oct. 2010 (CGSC 2.1.3/panTro3) CGSC 2.1.3 (GCA_000001515.3) 2011-02-22 N/A 2011-10-2689.043%
03hg19Homo
sapiens
Human Feb. 2009 (GRCh37/hg19) GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) 2009-08-15 N/A 2011-10-2191.109%
04nomLeu1Nomascus
leucogenys
Gibbon Jan. 2010 (GGSC Nleu1.0/nomLeu1) GGSC (NCBI project 13975, accession GCA_000146795.1) 2011-11-16 N/A 2011-10-2683.476%
05ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 N/A 2011-10-2386.354%
06papHam1Papio
hamadryas
Baboon Nov. 2008 (Baylor 1.0/papHam1) Baylor BCM HGSC Pham_1.0 2009-09-02 N/A 2011-10-3179.434%
07rheMac2Macaca
mulatta
Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 2009-08-15 N/A 2011-10-2379.244%
08calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 N/A 2011-10-2768.507%
09tarSyr1Tarsius
syrichta
Tarsier Aug. 2008 (Broad/tarSyr1) Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) 2009-09-02 N/A 2011-11-0519.482%
10micMur1Microcebus
murinus
Mouse lemur Jun. 2003 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 N/A 2011-11-0322.908%
11otoGar1Otolemur
garnettii
Bushbaby Dec. 2006 (Broad/otoGar1) Broad version 1 (NCBI project 16955, AAQR00000000) 2009-09-02 N/A 2011-10-2712.017%