Hg19 conservation alignment
From genomewiki
Jump to navigationJump to search
see also
- 46-way Hg19 Genome size statistics
- 46-way Hg19 conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| UCSC db name |
Scientific name |
Common name |
assembly date |
source version |
Repeat Masker |
Window Masker |
chain on hg19 |
% of hg19 matched (chainLink table) |
|
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg19 | Homo sapiens | Human | GRCh37 | GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1) | 2009-04-24 | N/A | N/A | N/A |
| 02 | panTro2 | Pan troglodytes | Chimp | Mar. 2006 | Washington University Build 2 Version 1 | 2006-03-24 | N/A | 2009-03-20 | 94.846% |
| 03 | gorGor1 | Gorilla gorilla gorilla | Gorilla | Oct. 2008 | Sanger Institute Oct 2008 (NCBI project 31265, CABD01000000) | 2008-11-03 | N/A | 2009-03-22 | 59.484% |
| 04 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 | WUSTL 3.0 | 2007-09-15 | N/A | 2009-05-14 | 91.350% |
| 05 | rheMac2 | Macaca mulatta | Rhesus | Jan. 2006 | Venter Inst./Baylor/WashU Merged assembly Jan 2006 v1 edit4 | 2006-01-30 | N/A | 2009-05-14 | 82.744% |
| 06 | papHam1 | Papio hamadryas | Baboon | Nov. 2008 | Baylor BCM HGSC Pham_1.0 | 2009-05-13 | N/A | 2009-05-20 | 82.810% |
| 07 | calJac1 | Callithrix jacchus | Marmoset | June 2007 | WUSTL 2.0.2 | 2007-08-23 | N/A | 2009-05-14 | 70.860% |
| 08 | tarSyr1 | Tarsius syrichta | Tarsier | Aug. 2008 | Broad Institute tarSyr1 (NCBI project 20335, ABRT000000000) | 2008-10-15 | N/A | 2009-05-15 | 47.830% |
| 09 | micMur1 | Microcebus murinus | Mouse lemur | Jul. 2007 | Broad Institute micMur1 (NCBI project 19967, ABDC00000000) | 2008-08-03 | N/A | 2009-05-22 | 46.519% |
| 10 | otoGar1 | Otolemur garnettii | Bushbaby | Dec. 2006 | Broad version 1 (NCBI project 16955, AAQR00000000) | 2006-12-20 | N/A | 2009-05-15 | 43.644% |
| 11 | equCab2 | Equus caballus | Horse | Sep. 2007 | Broad Institute EquCab2 | 2008-04-03 | N/A | 2009-06-04 | 57.050% |
| 12 | tupBel1 | Tupaia belangeri | Tree shrew | Dec. 2006 | Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) | 2008-10-15 | N/A | 2009-06-01 | 36.156% |
| 13 | turTru1 | Tursiops truncatus | Dolphin | Feb. 2008 | Broad Institute turTru1 (NCBI project 20367, ABRN01000000) | 2008-10-15 | N/A | 2009-06-04 | 48.398% |
| 14 | speTri1 | Spermophilus tridecemlineatus | Squirrel | Feb. 2008 | Broad Institute speTri1 | 2008-08-03 | N/A | 2009-06-04 | 35.713% |
| 15 | vicPac1 | Vicugna pacos | Alpaca | Jul. 2008 | Broad Institute vicPac1 | 2008-10-17 | N/A | 2009-06-04 | 39.399% |
| 16 | choHof1 | Choloepus hoffmanni | Sloth | Jul. 2008 | Broad Institute choHof1 | 2008-10-16 | N/A | 2009-06-05 | 34.377% |
| 17 | pteVam1 | Pteropus vampyrus | Megabat | Jul. 2008 | Broad Institute pteVam1 (NCBI project 20325, ABRP01000000) | 2008-10-15 | N/A | 2009-06-04 | 45.414% |
| 18 | loxAfr3 | Loxodonta africana | Elephant | Jul. 2009 | Broad Institute loxAfr3 (NCBI project 12569, AAGU03000000) | 2009-07-15 | N/A | 2009-07-22 | 46.636% |
| 19 | felCat3 | Felis catus | Cat | Mar. 2006 | Broad Release 3 | 2006-10-16 | N/A | 2009-06-04 | 35.713% |
| 20 | canFam2 | Canis lupus familiaris | Dog | May 2005 | Broad Institute v. 2.0 | 2005-07-10 | N/A | 2009-05-14 | 52.879% |
| 21 | dasNov2 | Dasypus novemcinctus | Armadillo | Jul. 2008 | Broad Institute dasNov2 (NCBI project 12594, AAGV020000000) | 2008-10-07 | N/A | 2009-05-27 | 33.543% |
| 22 | oryCun2 | Oryctolagus cuniculus | Rabbit | Apr. 2009 | Broad Institute oryCun2 (NCBI project 12819, AAGW00000000) | 2009-08-11 | N/A | 2009-08-12 | 44.317% |
| 23 | myoLuc1 | Myotis lucifugus | Microbat | Mar. 2006 | Broad Institute myoLuc1 | 2008-07-29 | N/A | 2009-06-04 | 33.174% |
| 24 | bosTau4 | Bos taurus | Cow | Oct. 2007 | Baylor Release 4.0 | 2008-03-10 | N/A | 2009-06-04 | 46.506% |
| 25 | cavPor3 | Cavia porcellus | Guinea Pig | Feb. 2008 | Broad Institute cavPor3 | 2008-04-05 | 2008-04-08 | 2009-06-06 | 43.680% |
| 26 | proCap1 | Procavia capensis | Rock hyrax | Jul. 2008 | Broad Institute proCap1 (NCBI project 13972, ABRQ01000000) | 2008-10-16 | N/A | 2009-05-26 | 30.864% |
| 27 | dipOrd1 | Dipodomys ordii | Kangaroo rat | Jul. 2008 | Broad Institute dipOrd1 (NCBI project 20385, ABRO01000000) | 2008-10-15 | N/A | 2009-05-29 | 27.161% |
| 28 | ochPri2 | Ochotona princeps | Pika | Jul. 2008 | Broad Institute ochPri2 | 2008-07-28 | N/A | 2009-05-30 | 27.768% |
| 29 | eriEur1 | Erinaceus europaeus | Hedgehog | June 2006 | Broad Institute eriEur1 (Draft_v1, NCBI project 12575) | 2008-10-21 | 2008-10-21 | 2009-05-30 | 19.362% |
| 30 | echTel1 | Echinops telfairi | Tenrec | July 2005 | Broad July 2005 | 2005-08-04 | N/A | 2009-05-28 | 23.120% |
| 31 | mm9 | Mus musculus | Mouse | July 2007 | NCBI Build 37 | 2007-07-20 | N/A | 2009-05-13 | 35.299% |
| 32 | rn4 | Rattus norvegicus | Rat | Nov. 2004 | Baylor HGSC v. 3.4 | 2006-03-16 | N/A | 2009-05-13 | 32.879% |
| 33 | sorAra1 | Sorex araneus | Shrew | June 2006 | Broad Institute sorAra1 (Draft_v2) | 2008-10-20 | 2008-10-21 | 2009-05-29 | 19.760% |
| 34 | macEug1 | Macropus eugenii | Wallaby | Nov. 2007 | Baylor Release 1.0 | N/A | 2008-12-26 | 2009-05-31 | 6.011% |
| 35 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-07-06 | 2008-12-02 | 2009-05-29 | 14.358% |
| 36 | ornAna1 | Ornithorhynchus anatinus | Platypus | Mar. 2007 | WUSTL version 5.0.1 | 2007-07-20 | N/A | 2009-05-27 | 7.627% |
| 37 | galGal3 | Gallus gallus | Chicken | May 2006 | Chicken Genome Sequencing Consortium May 2006 release | 2006-05-18 | 2007-01-02 | 2009-05-14 | 3.591% |
| 38 | taeGut1 | Taeniopygia guttata | Zebra finch | Jul. 2008 | Washington University taeGut1 | 2009-02-04 | 2008-08-05 | 2009-05-26 | 3.496% |
| 39 | anoCar1 | Anolis carolinensis | Lizard | Feb. 2007 | Broad Institute AnoCar (1.0) | 2007-03-07 | 2007-02-16 | 2009-05-30 | 3.591% |
| 40 | xenTro2 | Xenopus tropicalis | X. tropicalis | Aug. 2005 | JGI v4.1 | 2006-04-17 | 2007-02-20 | 2009-05-27 | 3.176% |
| 41 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2006-10-17 | 2006-12-05 | 2009-05-14 | 1.916% |
| 42 | fr2 | Takifugu rubripes | Fugu | Oct. 2004 | JGI V4.0 | 2007-03-07 | 2007-01-22 | 2009-05-20 | 1.702% |
| 43 | danRer6 | Danio rerio | Zebrafish | Dec. 2008 | Wellcome Trust Sanger Institute, Zv8 assembly (CAAK00000000.5) | 2009-06-29 | N/A | 2009-07-10 | 3.051% |
| 44 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | N/A | 2009-08-07 | 2009-08-10 | 1.712% |
| 45 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2008-08-12 | 2008-08-14 | 2009-05-22 | 1.849% |
| 46 | petMar1 | Petromyzon marinus | Lamprey | Mar. 2007 | WUSTL v.3.0 (March 2007) | N/A | 2008-01-28 | 2009-05-14 | 1.082% |
