Hg38 20-way conservation alignment

From genomewiki
Revision as of 04:41, 16 April 2015 by Hiram (talk | contribs) (updated with new canFam3 rheMac3 and mm10 alignments)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

=see also

do not edit

This table is automatically generated off-line from the UCSC databases. Please do not edit it.

URL to
assembly
sequence
UCSC db name/
genome-preview
browser
Scientific name/
assembly information
Common
name
assembly date (version) source
version
Repeat
Masker
Window
Masker
chain
on hg38
% of hg38
matched
(chainLink table)
01hg38Homo
sapiens
Human Dec. 2013 (GRCh38/hg38) GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) 2014-01-10 2013-12-25 2015-01-14N/A
02panTro4Pan
troglodytes
Chimp Feb. 2011 (CSAC 2.1.4/panTro4) CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) 2012-01-09 2012-01-09 2014-05-2793.112%
03panPan1Pan
paniscus
Bonobo May. 2012 (Max-Planck/panPan1) Max-Planck Institute panpan1 (GCA_000258665.1) 2013-03-05 2013-03-07 2014-12-1192.929%
04gorGor3Gorilla
gorilla
gorilla
Gorilla May 2011 (gorGor3.1/gorGor3) Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) 2011-11-16 2013-06-21 2014-12-1588.005%
05ponAbe2Pongo
pygmaeus
abelii
Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) WUSTL 3.0 2009-08-15 2013-06-21 2014-09-0289.187%
06nomLeu3Nomascus
leucogenys
Gibbon Oct. 2012 (GGSC Nleu3.0/nomLeu3) Gibbon Genome Sequencing Consortium 2013-03-04 2013-03-01 2014-12-1286.379%
07nasLar1Nasalis
larvatus
Proboscis monkey Nov. 2014 (Charlie1.0/nasLar1) Proboscis Monkey Functional Genome Consortium 2014-12-12 2014-12-12 2014-12-1574.541%
08rhiRox1Rhinopithecus
roxellana
Golden snub-nosed monkey Oct. 2014 (Rrox_v1/rhiRox1) Novogene 2015-02-20 2015-02-18 2015-02-2385.109%
09macFas5Macaca
fascicularis
Crab-eating macaque Jun 2013 (Macaca_fascicularis_5.0/macFas5) Washington University (WashU) GCA_000364345.1 2013-06-30 2013-06-30 2014-12-1485.675%
10rheMac3Macaca
mulatta
Rhesus Oct. 2010 (BGI CR_1.0/rheMac3) Beijing Genomics Institute, Shenzhen (GCA_000230795.1) 2011-12-30 2012-01-03 2015-04-0980.828%
11papAnu2Papio
anubis
Baboon Mar. 2012 (Baylor Panu_2.0/papAnu2) Baylor College of Medicine 2012-07-22 2012-08-07 2014-12-1384.179%
12saiBol1Saimiri
boliviensis
Squirrel monkey Oct. 2011 (Broad/saiBol1) Broad SaiBol1.0 (GCA_000235385.1) 2012-01-07 2012-01-09 2014-12-1370.565%
13chlSab2Chlorocebus
sabaeus
Green monkey 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) Vervet Genomics Consortium GCA_000409795.2 2014-04-10 2014-04-10 2014-07-1184.393%
14calJac3Callithrix
jacchus
Marmoset March 2009 (WUGSC 3.2/calJac3) WUSTL 3.2 (GCA_000004665.1) 2010-02-05 2013-06-21 2014-12-1371.709%
15tarSyr2Tarsius
syrichta
Tarsier Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Washington University 2014-11-21 2014-11-22 2014-12-1256.022%
16micMur1Microcebus
murinus
Mouse lemur Jul. 2007 (Broad/micMur1) Broad Institute micMur1 (NCBI project 19967, ABDC00000000) 2009-09-02 2012-05-04 2015-03-2242.653%
17otoGar3Otolemur
garnettii
Bushbaby Mar. 2011 (Broad/otoGar3) Broad Institute (GCA_000181295.3) 2012-03-13 2012-03-14 2015-02-2353.196%
18canFam3Canis
lupus
familiaris
Dog Sep. 2011 (Broad CanFam3.1/canFam3) Broad CanFam3.1 (GCA_000002285.2) 2012-01-05 2012-01-06 2015-04-1050.395%
19tupBel1Tupaia
belangeri
Tree shrew Dec. 2006 (Broad/tupBel1) Broad Institute tupBel1 (NCBI project 13971, AAPY01000000) 2009-09-02 2012-05-03 2015-03-2735.019%
20mm10Mus
musculus
Mouse Dec. 2011 (GRCm38/mm10) Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) 2012-02-06 2012-02-07 2015-04-0931.653%