Little Tools

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Revision as of 12:56, 11 August 2006 by Max (talk | contribs)
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This is supposed to become a little collection of tools to facilitate everyday work with the UCSC file formats/tools. It's possible that they already exist somewhere in the the source tree but since there is so little documentation about the source tree, I might have overlooked them. I'm trying to add one per week.

bedProject Will add or substract numbers from positions in a bed file (gawk)
bedTotalSize Prints length of region covered by bedfile (python)
bedRegion Prints the maximum range coverd by a bed (gawk)
ucsc Uploads a file to your favorite ftp server and displays it on the UCSC of your choice with firefox (bash)