User contributions for David da Silva Pires
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10 April 2017
- 12:3712:37, 10 April 2017 diff hist −15 GBiB: From download to BLAT at assembly hubs Making a double check with hubCheck: file and URL.
- 12:1712:17, 10 April 2017 diff hist −304 GBiB: From download to BLAT at assembly hubs Removing a call for the hubCheck command and placing the explanation in a better place.
- 12:0112:01, 10 April 2017 diff hist −70 GBiB: From download to BLAT at assembly hubs Dealing with genomes that have chromosomes names too long.
- 10:2310:23, 10 April 2017 diff hist +160 GBiB: From download to BLAT at assembly hubs Dealing with genomes that have all nucleotides as lowecase letters.
7 April 2017
- 16:5316:53, 7 April 2017 diff hist +375 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Including the assembly track configuration in the main trackDb.txt.
- 16:4616:46, 7 April 2017 diff hist +122 GBiB: From download to BLAT at assembly hubs Checking AGP and FASTA file in the right place.
- 16:2816:28, 7 April 2017 diff hist +6 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Fixing the path after organizing the assembly track inside the group map.
- 13:5213:52, 7 April 2017 diff hist −48 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Changing the order of presentation, creating all the directories in just one command, separating the assembly track at map grouping and making use of input and output.
- 13:3413:34, 7 April 2017 diff hist −2 m GBiB: From download to BLAT at assembly hubs →GBiB installation: Typo.
6 April 2017
- 17:4817:48, 6 April 2017 diff hist +51 GBiB: From download to BLAT at assembly hubs →Blat configuration: Fixing the working directory and warning about the capital 'B' in "transBlat".
- 17:0617:06, 6 April 2017 diff hist +76 GBiB: From download to BLAT at assembly hubs →Blat configuration: Creating a log directory and fixing gfServer commands.
- 13:0713:07, 6 April 2017 diff hist +35 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: A better bedToBigBed command.
- 13:0513:05, 6 April 2017 diff hist +7 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Fixing the filename.
- 13:0313:03, 6 April 2017 diff hist +100 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Making a symbolic link for the eboVir3-chromSizes.txt file.
- 12:5812:58, 6 April 2017 diff hist +7 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: Now eboVir3.agp file is in the output/ directory.
- 12:5712:57, 6 April 2017 diff hist +7 m GBiB: From download to BLAT at assembly hubs →Track hub configuration: The assembly.bed file should also go to the output/ directory.
- 12:5512:55, 6 April 2017 diff hist +160 GBiB: From download to BLAT at assembly hubs →Track hub configuration: Organizing the files in subdirectories.
- 12:4912:49, 6 April 2017 diff hist −90 GBiB: From download to BLAT at assembly hubs →Preparing the data: Simplifying the build of the chromSizes-sorted file.
- 12:4312:43, 6 April 2017 diff hist +11 GBiB: From download to BLAT at assembly hubs →Preparing the data: Simplifying the build of the .2bit file.
- 12:1112:11, 6 April 2017 diff hist −11 GBiB: From download to BLAT at assembly hubs Removing one pipe since awk can do the comparison and the printing in just one command. Simplifying the output filename.