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• Category:User Developed Scripts
  Scripts developed by users for various tasks
  32 members (0 subcategories, 3 files) - 17:53, 15 August 2006

Page text matches

• File:ParseBlatOutput zip.txt [[Category:User Developed Scripts]] (1 KB) - 19:04, 23 March 2007

• BedTotalSize
  [[Category:User Developed Scripts]]
  170 bytes (31 words) - 09:16, 15 September 2006

• File:BlatBot pl.txt [[Category:User Developed Scripts]] (5 KB) - 07:41, 1 September 2018

• File:FixStepToBedGraph pl.txt [[Category:User Developed Scripts]] (2 KB) - 13:39, 24 November 2010

• BedFrag
  [[Category:User Developed Scripts]]
  401 bytes (45 words) - 10:06, 28 September 2006
• Little Tools
  ; [[log]] little scripts to keep logfiles of what you are doing, very handy (bash) [[Category:User Developed Scripts]]
  1 KB (185 words) - 13:44, 24 June 2010
• Blat Scripts
  ...e notify me by selecting the e-mail user link from the side menu bar at: [[User:Hartera]] [[Category:User Developed Scripts]]
  2 KB (284 words) - 22:50, 13 September 2011
• BedInverseExons
  ...ommon for biologists, they usually call the most upstream one exon 1. This scripts inverses the numbers. [[Category:User Developed Scripts]]
  937 bytes (142 words) - 12:10, 8 October 2007
• BedOverlapName
  [[Category:User Developed Scripts]]
  506 bytes (62 words) - 21:41, 26 October 2006
• Bed2UCSC
  [[Category:User Developed Scripts]]
  843 bytes (149 words) - 18:06, 24 August 2010
• BedRegion
  [[Category:User Developed Scripts]]
  1 KB (96 words) - 23:37, 9 September 2006
• TextReplace
  ...constructs) and it was very slow. Replacing 18000 strings with one big sed scripts takes ages. This script is reasonable fast while still being very simple. O [[Category:User Developed Scripts]]
  2 KB (327 words) - 23:50, 18 March 2007
• Log
  [[Category:User Developed Scripts]]
  1 KB (249 words) - 17:49, 15 February 2015
• Blastz
  ...sultsPanel.Pubmed_RVDocSum Blastz] is a nucleotide local alignment program developed by Webb Miller's group at PSU (http://www.bx.psu.edu/miller_lab/). It take ...rtz, collaborating with [[User:Jimkent|Jim]], developed blastz and wrapper scripts to improve its performance to the point where an alignment of the whole gen
  4 KB (660 words) - 19:26, 29 August 2018
• PslProtCnv
  [[Category:User Developed Scripts]]
  2 KB (194 words) - 17:14, 18 January 2007
• BedProject
  [[Category:User Developed Scripts]]
  3 KB (258 words) - 23:34, 14 August 2006
• BedBlastLift
  ...east a hint where it should be roughly located. This is what the following scripts does. It needs the bed file from sequence1 and the result from tblastx with [[Category:User Developed Scripts]]
  5 KB (714 words) - 17:07, 19 September 2006
• Main Page
  ...:User Developed Scripts| User Developed Scripts]] - helpful hints from the user community
  5 KB (773 words) - 21:15, 26 February 2019
• Ucsc
  #ncftpput -u $USER -p $PASS $SERVER $UPLOADPATH $1 > /dev/null [[Category:User Developed Scripts]]
  2 KB (329 words) - 07:30, 1 September 2018
• Source tree compilation on Debian/Ubuntu
  Please note the instructions and scripts in the source tree that can build the kent source tree on DIRS='SCRIPTS=/usr/local/bin CGI_BIN=/usr/lib/cgi-bin DOCUMENTROOT=/var/www/genome BINDIR
  5 KB (842 words) - 07:32, 1 September 2018

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