VGP Assembly gap analysis: Difference between revisions

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Revision as of 20:51, 23 August 2019

Assembly ID

UCSC browser link

assembly

size

sequence

count

number

of gaps

total

gap size

smallest

gap

largest

gap

median

size

mean

size

common name

VGP link

GCA_003957555.2_bCalAnn1_v1.p 1,059,706,240 160 429 16,096,800 1 664,828 100 37,521.7 Anna's hummingbird
GCA_003957565.2_bTaeGut1_v1.p 1,058,012,133 135 312 2,334,250 1 535,815 200 7,481.6 zebra finch
GCA_004027225.1_bStrHab1_v1.p 1,165,639,803 100 362 27,568,500 1 9,491,740 500 76,156.1 owl parrot
GCA_004115265.2_mRhiFer1_v1.p 2,075,785,400 135 158 7,546,100 1 833,261 499 47,760.1 greater horseshoe bat
GCA_007364275.1_fArcCen1 932,947,025 189 744 16,903,500 1 1,459,710 100 22,719.7 flier cichlid
GCA_007399415.1_rGopEvg1_v1.p 2,298,564,209 383 562 29,560,300 1 3,059,780 100 52,598.4 Goodes thornscrub tortoise
GCA_007474595.1_mLynCan4_v1.p 2,408,900,816 67 848 2,778,740 1 378,177 100 3,276.8 Canada lynx
GCA_900324465.2_fAnaTes1.2 555,641,398 50 266 3,606,500 25 482,892 100 13,558.3 climbing perch
GCA_900324485.2_fMasArm1.2 591,935,101 122 238 13,231,300 2 607,827 300 55,593.9 zig-zag eel
GCA_901699155.1_bStrTur1.1 1,178,928,410 357 894 3,876,370 2 156,350 100 4,336.0 turtle dove
GCA_901709675.1_fSynAcu1.1 324,331,233 87 43 13,700 100 500 200 318.6 greater pipefish
GCA_901765095.1_aMicUni1.1 4,685,923,413 1,080 2,452 47,437,300 1 2,824,530 100 19,346.4 tiny Cayenne caecilian
GCF_004115215.1_mOrnAna1.p.v1 1,858,552,590 305 522 15,159,800 1 1,622,070 100 29,041.8 platypus
GCF_004126475.1_mPhyDis1_v1.p 2,117,764,065 141 831 22,966,500 1 1,480,060 500 27,637.1 pale spear-nosed bat
GCF_900246225.1_fAstCal1.2 880,445,564 249 490 1,186,660 19 211,000 25 2,421.8 eastern happy
GCF_900634415.1_fCotGob3.1 609,391,784 322 445 2,553,980 9 500,417 100 5,739.3 channel bull blenny
GCF_900634625.1_fParRan2.1 551,012,959 156 1,523 10,561,500 1 153,246 4,304 6,934.7 Indian glassy fish
GCF_900634775.1_fGouWil2.1 937,150,793 441 1,160 14,353,500 1 2,682,550 100 12,373.7 blunt-snouted clingfish
GCF_900700375.1_fDenClu1.1 567,401,054 460 464 4,648,390 13 518,837 100 10,018.1 denticle herring
GCF_900747795.1_fErpCal1.1 3,811,038,701 1,885 5,614 238,295,000 3 1,733,650 5,046 42,446.5 reedfish
GCF_900963305.1_fEcheNa1.1 544,229,245 38 140 599,356 13 248,230 100 4,281.1 live sharksucker
GCF_900964775.1_fSclFor1.1 784,563,014 72 145 41,360 13 14,756 100 285.2 Asian bonytongue
GCF_901000725.2_fTakRub1.2 384,126,662 128 402 3,688,530 10 428,276 100 9,175.5 torafugu
GCF_901001135.1_aRhiBiv1.1 5,319,239,201 1,330 3,573 33,955,800 4 771,063 100 9,503.5 two-lined caecilian