Whole genome alignment howto: Revision history

22 February 2019

• curprev 23:1423:14, 22 February 2019‎ Dschmelt talk contribs‎ 16,362 bytes −164‎ →‎doBlastzChainNet.pl: Removing broken link
• curprev 23:1223:12, 22 February 2019‎ Dschmelt talk contribs‎ 16,526 bytes −38‎ Changing <code> tags to <pre> tags to prevent unnecessary newlines
• curprev 23:0923:09, 22 February 2019‎ Dschmelt talk contribs‎ 16,564 bytes −10‎ →‎Example, step 1: Alignments with Blastz: Changing code tags to Pre tags to prevent unnecessary newlines

1 September 2018

• curprev 07:1007:10, 1 September 2018‎ Galt talk contribs‎ 16,574 bytes −7‎ changed cse to soe and genome-source fixes

26 April 2018

• curprev 15:2015:20, 26 April 2018‎ Hiram talk contribs‎ 16,581 bytes 0‎ →‎2018 UPDATE NOTE
• curprev 15:2015:20, 26 April 2018‎ Hiram talk contribs‎ 16,581 bytes 0‎ corrected doBlastzChainNet.pl

9 April 2018

• curprev 17:1517:15, 9 April 2018‎ Hiram talk contribs‎ 16,581 bytes +321‎ adding note to reference the doChainNetBlastz.pl script

27 February 2017

• curprev 17:5217:52, 27 February 2017‎ Cath Tyner talk contribs‎ 16,260 bytes +31‎ Highlighting an important file with the needed steps

7 October 2015

• curprev 22:2422:24, 7 October 2015‎ Matt Speir talk contribs‎ 16,229 bytes +2‎ →‎Example, step 5: Phastcons

12 August 2015

• curprev 17:5117:51, 12 August 2015‎ Jonathan Casper talk contribs‎ 16,227 bytes +130‎ →‎Example, step 1: Alignments with Blastz

1 April 2015

• curprev 20:3420:34, 1 April 2015‎ Jonathan Casper talk contribs‎ 16,097 bytes +9‎ →‎doBlastzChainNet.pl

27 March 2015

• curprev 18:3318:33, 27 March 2015‎ Brian Lee talk contribs‎ 16,088 bytes +13‎ →‎Example, step 2: Chaining: changing pipermail to google group link

10 June 2013

• curprev 17:0617:06, 10 June 2013‎ Max talk contribs‎ 16,075 bytes +44‎ →‎Before you start

13 March 2013

• curprev 17:1817:18, 13 March 2013‎ Hiram talk contribs‎ 16,031 bytes +202‎ add reference to same species lift over

21 January 2013

• curprev 20:3320:33, 21 January 2013‎ Max talk contribs‎ 15,829 bytes +78‎ →‎Example, step 1: Alignments with Blastz

2 May 2012

• curprev 21:4321:43, 2 May 2012‎ Max talk contribs‎ 15,751 bytes +282‎ →‎Before you start

19 August 2011

• curprev 00:2900:29, 19 August 2011‎ Max talk contribs‎ 15,469 bytes +164‎ No edit summary

24 February 2011

• curprev 10:5710:57, 24 February 2011‎ Max talk contribs‎ 15,305 bytes +4‎ →‎Fileformats

19 February 2011

• curprev 16:5316:53, 19 February 2011‎ Max talk contribs‎ 15,301 bytes +353‎ →‎Outline - Notes: corrected wrong statements about multiz

26 January 2011

• curprev 00:1700:17, 26 January 2011‎ Hiram talk contribs‎ 14,948 bytes +242‎ add script dependents
• curprev 00:1400:14, 26 January 2011‎ Hiram talk contribs‎ 14,706 bytes +177‎ adding reference to runLastzChain.sh script

18 March 2010

• curprev 11:1811:18, 18 March 2010‎ Max talk contribs‎ 14,529 bytes +46‎ →‎Fileformats
• curprev 11:1811:18, 18 March 2010‎ Max talk contribs‎ 14,483 bytes +137‎ →‎Fileformats

19 February 2010

• curprev 20:1320:13, 19 February 2010‎ Max talk contribs‎ 14,346 bytes −36‎ →‎Before you start
• curprev 20:1320:13, 19 February 2010‎ Max talk contribs‎ 14,382 bytes −16‎ →‎Before you start
• curprev 20:1220:12, 19 February 2010‎ Max talk contribs‎ 14,398 bytes 0‎ →‎Before you start
• curprev 20:1220:12, 19 February 2010‎ Max talk contribs‎ 14,398 bytes +52‎ →‎Before you start

22 January 2010

• curprev 09:2109:21, 22 January 2010‎ Max talk contribs‎ 14,346 bytes +132‎ →‎Remarks
• curprev 09:1909:19, 22 January 2010‎ Max talk contribs‎ 14,214 bytes −47‎ →‎Example, step 3: Netting
• curprev 09:1709:17, 22 January 2010‎ Max talk contribs‎ 14,261 bytes +1‎ →‎Outline - Notes
• curprev 09:1609:16, 22 January 2010‎ Max talk contribs‎ 14,260 bytes +12‎ →‎Outline
• curprev 09:1509:15, 22 January 2010‎ Max talk contribs‎ 14,248 bytes +201‎ →‎Fileformats we have to know

8 December 2009

• curprev 09:3909:39, 8 December 2009‎ Max talk contribs‎ 14,047 bytes +124‎ No edit summary

5 March 2008

• curprev 18:2318:23, 5 March 2008‎ Rhead talk contribs‎ m 13,923 bytes −5‎ No edit summary

26 February 2008

• curprev 07:1607:16, 26 February 2008‎ Stajich talk contribs‎ 13,928 bytes −2‎ →‎Example, step 5: Phastcons: simplify

12 February 2008

• curprev 16:0816:08, 12 February 2008‎ Max talk contribs‎ 13,930 bytes −9‎ →‎Outline - Notes
• curprev 16:0716:07, 12 February 2008‎ Max talk contribs‎ 13,939 bytes −7‎ →‎Outline - More Details
• curprev 16:0616:06, 12 February 2008‎ Max talk contribs‎ 13,946 bytes +23‎ →‎Before you start

21 November 2007

• curprev 16:1216:12, 21 November 2007‎ Max talk contribs‎ 13,923 bytes −40‎ No edit summary

14 November 2007

• curprev 21:0721:07, 14 November 2007‎ AngieHinrichs talk contribs‎ 13,963 bytes +207‎ Added links to Blastz, Conservation_Track and the modEncode wiki page that AngieTest was a draft for.

26 October 2007

• curprev 17:1417:14, 26 October 2007‎ Max talk contribs‎ 13,756 bytes −106‎ →‎Problems
• curprev 08:1608:16, 26 October 2007‎ Max talk contribs‎ 13,862 bytes +170‎ added axtSorting

11 October 2007

• curprev 16:4316:43, 11 October 2007‎ Max talk contribs‎ 13,692 bytes −227‎ →‎Remarks
• curprev 16:4316:43, 11 October 2007‎ Max talk contribs‎ 13,919 bytes −8‎ →‎Example, step 5: Phastcons
• curprev 16:3916:39, 11 October 2007‎ Max talk contribs‎ 13,927 bytes −1‎ →‎Outline - More Details

2 October 2007

• curprev 10:1410:14, 2 October 2007‎ Max talk contribs‎ 13,928 bytes +3‎ No edit summary

1 October 2007

• curprev 12:3212:32, 1 October 2007‎ Max talk contribs‎ 13,925 bytes +108‎ →‎Remarks

28 September 2007

• curprev 07:5807:58, 28 September 2007‎ Max talk contribs‎ 13,817 bytes +21‎ →‎Outline
• curprev 07:5807:58, 28 September 2007‎ Max talk contribs‎ 13,796 bytes +156‎ →‎Outline

• curprev 07:5607:56, 28 September 2007‎ Max talk contribs‎ 13,640 bytes −30‎ →‎Example, step 2: Chaining