User contributions for AngieHinrichs
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13 November 2012
- 21:0221:02, 13 November 2012 diff hist −6 Build Environment Variables →Coming soon: USE_SAMTABIX: v275 is here!
- 20:5820:58, 13 November 2012 diff hist +96 KNETFILE HOOKS →Coming Soon!: v275 is out! Make this more prominent.
18 October 2012
- 04:0504:05, 18 October 2012 diff hist +708 Build Environment Variables →USE_BAM (+KNETFILE_HOOKS): Added section about samtabix, which hopefully will soon obviate patching & separate samtools and tabix!
17 October 2012
- 23:2123:21, 17 October 2012 diff hist +388 KNETFILE HOOKS →Description: Adding note about samtabix, which will soon make this obsolete, yay!
10 October 2012
- 18:2418:24, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent samtools patch file
- 18:2318:23, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent tabix version
- 18:2218:22, 10 October 2012 diff hist +44 KNETFILE HOOKS →Patch files for tabix: Added patch for tabix-0.2.6. MLQ #9102
- 18:2118:21, 10 October 2012 diff hist +225 N File:Knetfile hooks tabix-0.2.6.patch Modifies tabix library from [http://samtools.sourceforge.net/ samtools.sourceforge.net] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS. current
18 September 2012
- 18:2418:24, 18 September 2012 diff hist 0 KNETFILE HOOKS →Apply Patch: Gert Hulselmans pointed out that patch files begin with capital K (wiki forces uploaded file names to begin w/capital letter),
2 July 2012
- 22:1722:17, 2 July 2012 diff hist 0 m Presentations →2012: formatting fix
- 22:1522:15, 2 July 2012 diff hist +227 Presentations →2012: Added Biology of Genomes poster
7 May 2012
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pptx PPTX of Angie's Biology of Genomes 2012 poster current
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pdf PDF for Angie's Biology of Genomes 2012 poster current
- 15:5915:59, 7 May 2012 diff hist +3,026 N BoG2012VariationPoster Page with links to poster source, session links, 1kG data used, help pages etc. current
14 December 2011
- 16:5316:53, 14 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": Ugh, really uploading the updated file now. current
13 December 2011
- 23:5823:58, 13 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This now renames all instances of bgzf_ to ti_bgzf_ because some versions of samtools have more conflicts than others and the previous patch wasn't renaming enough bgzf_ func
7 December 2011
- 18:5518:55, 7 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This was out of date; it was missing the change from bgzf_tell to ti_bgzf_tell.
8 November 2011
- 22:5322:53, 8 November 2011 diff hist +412 Demo sandbox Added a subsection about dealing with possible rsync errors when building CGIs.
- 19:2519:25, 8 November 2011 diff hist +9 m Demo sandbox →Your demo responsibility: "assembly" -> "trackDb_demo''N''"
- 19:2319:23, 8 November 2011 diff hist +69 Demo sandbox →Building your demo assemblies: USER=demoN on command line; restore USER with /usr/bin/whoami if necessary.
- 19:1619:16, 8 November 2011 diff hist +570 Demo sandbox →Building your demo CGIs: Instead of modifying your shell envi's USER variable, you can set USER on the make command line -- seems cleaner to me. Also, no need for IMAGEEK; /usr/bin/whoami.
- 18:5818:58, 8 November 2011 diff hist +72 Demo sandbox →Claimed sandbox table: demo3
25 October 2011
- 19:0019:00, 25 October 2011 diff hist +287 KNETFILE HOOKS →Description: Added link to github pull request.
17 October 2011
- 17:4517:45, 17 October 2011 diff hist −87 KNETFILE HOOKS Made the samtools version sections into subsections of a samtools version notes section.
- 17:3217:32, 17 October 2011 diff hist +78 KNETFILE HOOKS →Patch files for samtools: added files for 0.1.16, 0.1.17
- 17:3117:31, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.16.patch Patch for samtools-0.1.16 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 17:2817:28, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.17.patch Patch for samtools-0.1.17 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 17:2017:20, 17 October 2011 diff hist +39 KNETFILE HOOKS Added patch file for samtools 0.1.18. Didn't add new section, nothing new to say about this patch relative to prior patches.
- 17:1617:16, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.18.patch Patch for samtools-0.1.18 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
7 September 2011
- 15:5615:56, 7 September 2011 diff hist +255 Presentations →2011: Added HGV2011 poster
- 15:5415:54, 7 September 2011 diff hist −1 HGV2011 →UCSC Genome Browser poster
- 15:5415:54, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser.pdf No edit summary current
- 15:4615:46, 7 September 2011 diff hist +49 m Presentations →2008
- 15:4415:44, 7 September 2011 diff hist +31 m HGV2011 →Other posters about the UCSC Genome Browser
- 15:4215:42, 7 September 2011 diff hist +246 HGV2011 →Other posters
- 15:1815:18, 7 September 2011 diff hist +7 m HGV2011 No edit summary
- 15:1715:17, 7 September 2011 diff hist +2 m HGV2011 →View poster screenshots in the Genome Browser
- 15:1615:16, 7 September 2011 diff hist +150 HGV2011 →View poster screenshots in the Genome Browser
- 15:1015:10, 7 September 2011 diff hist +113 HGV2011 →Other links
- 15:0815:08, 7 September 2011 diff hist 0 HGV2011 →View poster screenshots in the Genome Browser
- 06:3406:34, 7 September 2011 diff hist +1,490 HGV2011 Adding poster files, screenshot session links
- 06:0906:09, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser.pptx No edit summary current
- 06:0606:06, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser Abstract.docx No edit summary current
3 September 2011
- 07:2607:26, 3 September 2011 diff hist +17 m HGV2011 added conf. date
- 07:2407:24, 3 September 2011 diff hist +636 N HGV2011 very rough draft -- I intend to put this page's URL on my poster so there's something for people to click around, get poster source/pdf etc.
- 07:0607:06, 3 September 2011 diff hist +148 Presentations →2008: Added Genomics of Common Disease poster.
2 September 2011
- 22:5722:57, 2 September 2011 diff hist +53 N File:UCSC Genome Browser GCD 2008.pdf Poster presented at Genomics of Common Disease, 2008. current
- 22:5522:55, 2 September 2011 diff hist +53 N File:UCSC Genome Browser GCD 2008.ppt Poster presented at Genomics of Common Disease, 2008. current
24 August 2011
- 23:5123:51, 24 August 2011 diff hist +60 KNETFILE HOOKS Added section for tabix-0.2.5
- 23:5023:50, 24 August 2011 diff hist +44 KNETFILE HOOKS →Patch files for tabix
