User contributions for AngieHinrichs
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4 June 2015
- 19:0319:03, 4 June 2015 diff hist +2 BoG2015DataIntegratorPoster Updated one more link: demo6 --> preview current
1 May 2015
- 18:4518:45, 1 May 2015 diff hist +1 m BoG2015DataIntegratorPoster typo fix
- 18:4418:44, 1 May 2015 diff hist +123 m BoG2015DataIntegratorPoster →Other posters about the UCSC Genome Browser: Change File: to Media: for direct link; make formatting consistent
- 18:3518:35, 1 May 2015 diff hist +9 m BoG2015DataIntegratorPoster fix url formatting
- 18:3418:34, 1 May 2015 diff hist 0 m BoG2015DataIntegratorPoster →Poster: decapitalize
- 18:3418:34, 1 May 2015 diff hist +356 Presentations →2015: Adding BoG2015 poster on Data Integrator. Also changed File: to Media: to link to actual files instead of File: pages
- 18:2418:24, 1 May 2015 diff hist +51 BoG2015DataIntegratorPoster →Poster: Adding PDF & PPTX files
- 18:1918:19, 1 May 2015 diff hist +78 N File:BoG2015DataIntegrator.pptx poster on the Data Integrator presented at Biology of Genomes, CSHL, May 2015. current
- 18:1718:17, 1 May 2015 diff hist +75 N File:BoG2015DataIntegrator.pdf poster on the Data Integrator, presented at Biology of Genomes, CSHL, 2015. current
- 05:5605:56, 1 May 2015 diff hist +141 BoG2015DataIntegratorPoster →How to get help: Adding note that genome is public as suggested by Ann; adding genome-www private option
30 April 2015
- 16:4816:48, 30 April 2015 diff hist +300 BoG2015DataIntegratorPoster →How to get help: Added training URLs from b0b.
29 April 2015
- 23:1523:15, 29 April 2015 diff hist +51 m BoG2015DataIntegratorPoster →Data Integrator: mention session
- 23:1323:13, 29 April 2015 diff hist +324 BoG2015DataIntegratorPoster →Data Integrator: Add link to session on demo6; hopefully it will be on genome-preview by May 5th.
27 April 2015
- 23:1523:15, 27 April 2015 diff hist −30 m HGV2011 →Other links: fix broken link
- 23:0123:01, 27 April 2015 diff hist +6 m BoG2015DataIntegratorPoster →Poster: ...: don't include the verbose title in the section header.
- 22:5922:59, 27 April 2015 diff hist +1,411 m BoG2015DataIntegratorPoster Copying still more from Brooke's BoG2013VariationPoster and adding a reference to more recent posters
- 22:5122:51, 27 April 2015 diff hist +447 m BoG2015DataIntegratorPoster copying more of Brooke's structure
- 22:4422:44, 27 April 2015 diff hist +487 Nm BoG2015DataIntegratorPoster Skeleton of a page for Angie's poster on the Data Integrator at Biology of Genomes 2015
16 April 2015
- 19:1019:10, 16 April 2015 diff hist +3,356 Chains Nets Split into sections, wrote an intro and basic definitions. The Nets section needs more work, but at least this is an improvement.
11 March 2015
- 20:5320:53, 11 March 2015 diff hist +59 Presentations →2015: Adding files for 11 March 15 talk
- 20:5020:50, 11 March 2015 diff hist +78 N File:HgAi genecats 15 03 11.pdf slides for Angie's presentation on hgAi (Annotation Integrator) March 11, 2015 current
- 20:4720:47, 11 March 2015 diff hist +78 N File:HgAi genecats 15 03 11.pptx slides for Angie's presentation on hgAi (Annotation Integrator) March 15, 2015 current
- 20:4620:46, 11 March 2015 diff hist +84 m Presentations →2015: placeholder for talk (no files yet)
- 20:4420:44, 11 March 2015 diff hist +10 m Presentations Added 2015
6 March 2014
- 18:0818:08, 6 March 2014 diff hist +29 Demo sandbox →Claimed sandbox table: claimed demo6
- 17:5917:59, 6 March 2014 diff hist +470 Demo sandbox Updating info about which demo machines have their own htdocs-demo* directory (now all but demo3 and demo5).
17 January 2014
- 04:3204:32, 17 January 2014 diff hist +41 Demo sandbox →Claimed sandbox table: Tim asked for demo1 and I don't need it anymore.
30 April 2013
- 17:0517:05, 30 April 2013 diff hist +31 Demo sandbox →Claimed sandbox table: demo1
13 November 2012
- 21:0921:09, 13 November 2012 diff hist +246 Build Environment Variables →External library configuration (USE_*): Mark USE_BAM and USE_TABIX sections as obsoleted by USE_SAMTABIX.
- 21:0221:02, 13 November 2012 diff hist −6 Build Environment Variables →Coming soon: USE_SAMTABIX: v275 is here!
- 20:5820:58, 13 November 2012 diff hist +96 KNETFILE HOOKS →Coming Soon!: v275 is out! Make this more prominent.
18 October 2012
- 04:0504:05, 18 October 2012 diff hist +708 Build Environment Variables →USE_BAM (+KNETFILE_HOOKS): Added section about samtabix, which hopefully will soon obviate patching & separate samtools and tabix!
17 October 2012
- 23:2123:21, 17 October 2012 diff hist +388 KNETFILE HOOKS →Description: Adding note about samtabix, which will soon make this obsolete, yay!
10 October 2012
- 18:2418:24, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent samtools patch file
- 18:2318:23, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent tabix version
- 18:2218:22, 10 October 2012 diff hist +44 KNETFILE HOOKS →Patch files for tabix: Added patch for tabix-0.2.6. MLQ #9102
- 18:2118:21, 10 October 2012 diff hist +225 N File:Knetfile hooks tabix-0.2.6.patch Modifies tabix library from [http://samtools.sourceforge.net/ samtools.sourceforge.net] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS. current
18 September 2012
- 18:2418:24, 18 September 2012 diff hist 0 KNETFILE HOOKS →Apply Patch: Gert Hulselmans pointed out that patch files begin with capital K (wiki forces uploaded file names to begin w/capital letter),
2 July 2012
- 22:1722:17, 2 July 2012 diff hist 0 m Presentations →2012: formatting fix
- 22:1522:15, 2 July 2012 diff hist +227 Presentations →2012: Added Biology of Genomes poster
7 May 2012
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pptx PPTX of Angie's Biology of Genomes 2012 poster current
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pdf PDF for Angie's Biology of Genomes 2012 poster current
- 15:5915:59, 7 May 2012 diff hist +3,026 N BoG2012VariationPoster Page with links to poster source, session links, 1kG data used, help pages etc. current
14 December 2011
- 16:5316:53, 14 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": Ugh, really uploading the updated file now. current
13 December 2011
- 23:5823:58, 13 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This now renames all instances of bgzf_ to ti_bgzf_ because some versions of samtools have more conflicts than others and the previous patch wasn't renaming enough bgzf_ func
7 December 2011
- 18:5518:55, 7 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This was out of date; it was missing the change from bgzf_tell to ti_bgzf_tell.
8 November 2011
- 22:5322:53, 8 November 2011 diff hist +412 Demo sandbox Added a subsection about dealing with possible rsync errors when building CGIs.
- 19:2519:25, 8 November 2011 diff hist +9 m Demo sandbox →Your demo responsibility: "assembly" -> "trackDb_demo''N''"
- 19:2319:23, 8 November 2011 diff hist +69 Demo sandbox →Building your demo assemblies: USER=demoN on command line; restore USER with /usr/bin/whoami if necessary.
- 19:1619:16, 8 November 2011 diff hist +570 Demo sandbox →Building your demo CGIs: Instead of modifying your shell envi's USER variable, you can set USER on the make command line -- seems cleaner to me. Also, no need for IMAGEEK; /usr/bin/whoami.
