BoG2015DataIntegratorPoster: Difference between revisions

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This page expands on the UCSC Genome Browser poster presented by Angie at Biology of Genomes 2015 [http://meetings.cshl.edu/meetings/2015/genome15.shtml]. The poster presents a first look at a new too in the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC Genome Browser] suite, the [http://hgwdev-demo6.cse.ucsc.edu/cgi-bin/hgIntegrator Data Integrator].
This page expands on the UCSC Genome Browser poster presented by Angie Hinrichs at [http://meetings.cshl.edu/meetings/2015/genome15.shtml Biology of Genomes 2015]. The poster presents a first look at a new tool in the [http://genome.ucsc.edu/cgi-bin/hgGateway UCSC Genome Browser] suite, the [http://genome-preview.cse.ucsc.edu/cgi-bin/hgIntegrator Data Integrator].


=Poster: The Data Integrator: A new way to combine data sources underlying the UCSC Genome Browser=
=Poster=
links to PDF and PPTX here when they're ready
'''The Data Integrator: a new way to combine data sources underlying the UCSC Genome Browser'''
 
Poster files: [[Media:BoG2015DataIntegrator.pdf|PDF]]  [[Media:BoG2015DataIntegrator.pptx|PPTX]]


=Data Integrator=
=Data Integrator=
Blah blah blah
As of May 5, 2015 the Data Integrator is available only on our [http://genome-preview.ucsc.edu/cgi-bin/hgIntegrator?hgS_doOtherUser=submit&hgS_otherUserName=AngieHinrichs&hgS_otherUserSessionName=BoG2015 preview site] (the link preloads the tracks shown in the poster).  We intend to release it on our main site ([http://genome.ucsc.edu/ http://genome.ucsc.edu]) by the end of June 2015.


=How to get help=
=How to get help=
* Search for answers in our mail list archives: [http://genome.ucsc.edu/contacts.html http://genome.ucsc.edu/contacts.html]
* Search for answers in our mail list archives: [http://genome.ucsc.edu/contacts.html http://genome.ucsc.edu/contacts.html]
* Email a new question to our actively monitored list [mailto:genome@soe.ucsc.edu genome@soe.ucsc.edu]
* Email a new question to our actively monitored '''public archived''' list [mailto:genome@soe.ucsc.edu genome@soe.ucsc.edu]
* OpenHelix's free training materials: [http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml]
* Email a private question to our UCSC-only non-archived list [mailto:genome-www@soe.ucsc.edu genome-www@soe.ucsc.edu]
* UCSC Genome Browser training (workshops, videos, tutorials): [http://genome.ucsc.edu/training/ http://genome.ucsc.edu/training/]
* UCSC Genome Browser YouTube channel: [http://bit.ly/genomebrowserYoutube http://bit.ly/genomebrowserYoutube]
* UCSC Genome Browser blog: [http://genome.ucsc.edu/blog/ http://genome.ucsc.edu/blog/]
* OpenHelix's free training materials: [http://www.openhelix.com/downloads/ucsc/ http://www.openhelix.com/downloads/ucsc/]
 
=Other posters about the UCSC Genome Browser=
* View your data with ease and privacy in the UCSC Genome Browser.  Barber GP ''et al.''  Genome Informatics, 2014. [[Media:GenomeInformatics2014Poster.pdf|PDF]]
* New variation resources at the UCSC Genome Browser. Rhead B ''et al.''  Biology of Genomes, 2013. [[BoG2013VariationPoster | wiki]]  [[Media:BoG2013variation.pptx | PPTX]]  [[Media:BoG2013variation.pdf | PDF]]
* Remote sequence assembly viewing on the UCSC Genome Browser.  Clawson H ''et al.''  Biology of Genomes, 2013. [[Assembly_Hubs | wiki]]  [[Media:AssemblyHubs_BoG_2013.pdf | PDF]]  [[Media:AssemblyHubs_BoG_2013.pptx| PPTX]]
* Using the UCSC Genome Browser to evaluate putative genetic variants. Hinrichs AS ''et al.'' Biology of Genomes, 2012. [[BoG2012VariationPoster|wiki]] [[Media:Hinrichs_BoG2012_GBVariants.pptx|PPTX]] [[Media:Hinrichs_BoG2012_GBVariants.pdf|PDF]]
* Visually integrating genomic data in the UCSC Genome Browser. Hinrichs AS ''et al.'' HGV, 2011. [[HGV2011|wiki]]  [[Media:HGV2011_GenomeBrowser.pptx|PPTX]]  [[Media:HGV2011_GenomeBrowser.pdf|PDF]]
* UCSC Genome Browser Data Hubs. Zweig AS ''et al.'' Biology of Genomes, 2011. [http://users.soe.ucsc.edu/~ann/BoG2011.pdf PDF]
* Genome-wide ENCODE Data at UCSC. Rosenbloom KR ''et al.'' ASHG, 2010. [[Media:ENCODE_ASHG2010.ppt|PPT]]
* UCSC Genome Browser Tool Suite. Hinrichs AS ''et al.'' Genomics of Common Disease, 2008. [[Media:UCSC_Genome_Browser_GCD_2008.ppt|PPT]] [[Media:UCSC_Genome_Browser_GCD_2008.pdf|PDF]]
* More [[Presentations]]

Latest revision as of 19:03, 4 June 2015

This page expands on the UCSC Genome Browser poster presented by Angie Hinrichs at Biology of Genomes 2015. The poster presents a first look at a new tool in the UCSC Genome Browser suite, the Data Integrator.

Poster

The Data Integrator: a new way to combine data sources underlying the UCSC Genome Browser

Poster files: PDF PPTX

Data Integrator

As of May 5, 2015 the Data Integrator is available only on our preview site (the link preloads the tracks shown in the poster). We intend to release it on our main site (http://genome.ucsc.edu) by the end of June 2015.

How to get help

Other posters about the UCSC Genome Browser

  • View your data with ease and privacy in the UCSC Genome Browser. Barber GP et al. Genome Informatics, 2014. PDF
  • New variation resources at the UCSC Genome Browser. Rhead B et al. Biology of Genomes, 2013. wiki PPTX PDF
  • Remote sequence assembly viewing on the UCSC Genome Browser. Clawson H et al. Biology of Genomes, 2013. wiki PDF PPTX
  • Using the UCSC Genome Browser to evaluate putative genetic variants. Hinrichs AS et al. Biology of Genomes, 2012. wiki PPTX PDF
  • Visually integrating genomic data in the UCSC Genome Browser. Hinrichs AS et al. HGV, 2011. wiki PPTX PDF
  • UCSC Genome Browser Data Hubs. Zweig AS et al. Biology of Genomes, 2011. PDF
  • Genome-wide ENCODE Data at UCSC. Rosenbloom KR et al. ASHG, 2010. PPT
  • UCSC Genome Browser Tool Suite. Hinrichs AS et al. Genomics of Common Disease, 2008. PPT PDF
  • More Presentations
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