DanRer10 12-way conservation alignment
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see also
- Zebrafish 12-way DanRer10 12-way Genome size statistics
- Zebrafish 12-way DanRer10 12-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on danRer10 |
% of danRer10 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | danRer10 | Danio rerio | Zebrafish | Sep. 2014 (GRCz10/danRer10) | Genome Reference Consortium Zebrafish Build 10 (GCA_000002035.3) | 2015-01-26 | 2015-01-22 | N/A | N/A |
| 02 | gasAcu1 | Gasterosteus aculeatus | Stickleback | Feb. 2006 (Broad/gasAcu1) | Broad Institute gasAcu1 (1.0) (NCBI project 13579, AANH01000000) | 2009-08-15 | 2009-08-15 | 2017-02-10 | 9.814% |
| 03 | lepOcu1 | Lepisosteus oculatus | Spotted gar | Dec 2011 (LepOcu1/lepOcu1) | Broad Institute of MIT and Harvard GCA_000242695.1 | 2013-08-28 | 2013-08-28 | 2020-02-25 | 8.409% |
| 04 | tetNig2 | Tetraodon nigroviridis | Tetraodon | Mar. 2007 (Genoscope 8.0/tetNig2) | Genoscope Tetraodon v8.0 (NCBI project 12350, CAAE01000000) | 2010-06-07 | 2009-09-02 | 2017-02-09 | 6.063% |
| 05 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | 2017-02-09 | 7.080% |
| 06 | oryLat2 | Oryzias latipes | Medaka | Oct. 2005 (NIG/UT MEDAKA1/oryLat2) | NIG and Tokyo Univ MEDAKA1 (NCBI project 16702, BAAF04000000) | 2009-08-15 | 2009-08-15 | 2017-02-09 | 9.640% |
| 07 | xenTro9 | Xenopus tropicalis | X. tropicalis | Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) | DOE Joint Genome Institute | 2017-03-27 | 2017-03-27 | 2020-02-25 | 6.731% |
| 08 | galGal6 | Gallus gallus | Chicken | Mar. 2018 (GRCg6a/galGal6) | Genome Reference Consortium | 2018-10-11 | 2018-10-11 | 2020-02-25 | 5.871% |
| 09 | calMil1 | Callorhinchus milii | Elephant shark | Dec. 2013 (Callorhinchus_milii-6.1.3/calMil1) | Institute of Molecular and Cell Biology, Singapore | 2014-04-01 | 2014-04-01 | 2020-02-25 | 5.599% |
| 10 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.15) | 2014-01-10 | 2013-12-25 | 2015-02-09 | 7.110% |
| 11 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2015-09-18 | 5.228% |
| 12 | latCha1 | Latimeria chalumnae | Coelacanth | Aug. 2011 (Broad/latCha1) | Broad LatCha1 (GCA_000225785.1) | 2012-01-11 | 2012-01-12 | 2020-02-25 | 6.319% |
