Dm6 27-way Genome size statistics

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see also

statistics collected from UCSC 2bit files

  • The external link in the first column goes to the FTP location where the genome sequence was obtained
  • The external links from the UCSC database name go to the UCSC genome-preview browser for that genome
  • N bases == unknown bases in the assembly marked by "N"
  • non-N bases == called bases in the assembly
  • total size == all bases in assembly, N and non-N
  • The % masked is masking from Repeat Masker or Window Masker plus TRF/Simple Repeats, whichever is greater, usually WindowMasker for these genomes
  • The common name external links go to information pages for this genome
  • The coverage numbers are taken directly from information README files from the sequencing center
  • The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser

do not edit, automatically generated table

order
count/
ftp src
ucsc
db name/
genome-preview
chrom
count
total
size
non-N
bases
N base
count
% masked common name/
src info
coverage N50
chrom.sizes
alignment type % of dm6
matched
(chainLink table)
chain
minScore
chain
linearGap
[N/A 01]dm6 1,870 143,726,002142,573,024 1,152,978% 21.07 [N/A D. melanogaster]  25286936 N/AN/A N/A N/A
[N/A 02]droSec1 14,730 166,577,145157,238,575 9,338,570% 21.33 [N/A D. sechellia]  2123299 SyntenicNet82.561% 3000 loose
[N/A 03]droSim1 18 142,420,719127,253,507 15,167,212% 11.96 [N/A D. simulans]  22036055 SyntenicNet80.042% 3000 loose
[N/A 04]droEre2 5,124 152,712,140145,084,019 7,628,121% 13.05 [N/A D. erecta]  18748788 SyntenicNet80.023% 3000 loose
05droYak3 8,123 165,709,965162,597,893 3,112,072% 24.51 [N/A D. yakuba]  21770863 SyntenicNet80.562% 3000 loose
06droBia2 5,523 169,378,599168,601,554 777,045% 26.62 [N/A D. biarmipes]  3386121 SyntenicNet75.042% 3000 loose
07droSuz1 8,680 232,923,092202,303,443 30,619,649% 27.75 [N/A D. suzukii]  388966 SyntenicNet74.591% 3000 loose
[N/A 08]droAna3 13,749 230,993,012213,918,817 17,074,195% 16.65 [N/A D. ananassae]  4599533 SyntenicNet67.282% 3000 loose
09droBip2 5,500 167,263,958166,410,816 853,142% 29.82 [N/A D. bipectinata]  663995 SyntenicNet65.865% 3000 loose
10droEug2 4,946 156,942,009156,326,779 615,230% 26.40 [N/A D. eugracilis]  976885 SyntenicNet75.265% 3000 loose
11droEle2 5,429 171,267,669170,533,328 734,341% 28.44 [N/A D. elegans]  1714184 SyntenicNet75.445% 3000 loose
12droKik2 5,141 164,292,578163,450,299 842,279% 30.05 [N/A D. kikkawai]  903682 SyntenicNet70.590% 3000 loose
13droTak2 5,733 182,106,768181,031,534 1,075,234% 33.38 [N/A D. takahashii]  387676 SyntenicNet75.507% 3000 loose
14droRho2 22,819 197,375,704193,888,469 3,487,235% 30.85 [N/A D. rhopaloa]  45514 SyntenicNet74.940% 3000 loose
15droFic2 5,754 152,439,475151,050,198 1,389,277% 25.24 [N/A D. ficusphila]  1050541 SyntenicNet74.740% 3000 loose
16droMir2 6 136,728,780132,558,069 4,170,711% 25.35 [N/A D. miranda]  28826359 SyntenicNet59.308% 3000 loose
17droWil2 14,838 235,516,348223,610,028 11,906,320% 36.41 [N/A D. willistoni]  4511350 SyntenicNet51.432% 3000 loose
[N/A 18]droPer1 12,838 188,374,079175,583,556 12,790,523% 14.60 [N/A D. persimilis]  1869541 SyntenicNet59.049% 3000 loose
19droPse3 4,791 152,711,298149,042,033 3,669,265% 25.23 [N/A D. pseudoobscura]  12541198 SyntenicNet59.836% 3000 loose
[N/A 20]droGri2 17,440 200,467,819186,090,669 14,377,150% 13.64 [N/A D. grimshawi]  8399593 SyntenicNet50.979% 3000 loose
21musDom2 20,487 750,416,349691,732,557 58,683,792% 57.08 [N/A M. domestica]  226573 Net19.278% 3000 loose
[N/A 22]anoGam1 7 287,805,703263,156,584 24,649,119% 8.42 [N/A A. gambiae]  53272125 Net14.452% 3000 loose
23droAlb1 26,354 253,560,284215,790,107 37,770,177% 33.05 [N/A D. albomicans]  23589 SyntenicNet44.544% 3000 loose
[ 24]apiMel4 5,321 250,287,000229,121,901 21,165,099% 45.35 A. mellifera  13219345 Net8.183% 3000 loose
[N/A 25]droMoj3 6,841 193,826,310180,207,831 13,618,479% 15.52 [N/A D. mojavensis]  24764193 SyntenicNet50.132% 3000 loose
[N/A 26]droVir3 13,530 206,026,697189,205,863 16,820,834% 18.73 [N/A D. virilis]  10161210 SyntenicNet51.937% 3000 loose
[N/A 27]triCas2 2,211 199,682,416151,549,963 48,132,453% 3.16 [N/A T. castaneum]  13894384 Net14.092% 3000 loose