Dm6 27-way conservation alignment
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see also
- D. melanogaster 27-way Dm6 27-way Genome size statistics
- D. melanogaster 27-way Dm6 27-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on dm6 |
% of dm6 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| [url TBD 01] | dm6 | [src TBD Drosophila melanogaster] | D. melanogaster | Aug. 2014 (BDGP Release 6 + ISO1 MT/dm6) | The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics | 2014-08-28 | 2014-08-28 | N/A | N/A |
| [url TBD 02] | droSec1 | [src TBD Drosophila sechellia] | D. sechellia | Oct. 2005 (Broad/droSec1) | Broad 28 Oct. 2005 | 2009-08-14 | N/A | 2014-08-29 | 82.561% |
| [url TBD 03] | droSim1 | [src TBD Drosophila simulans] | D. simulans | Apr. 2005 (WUGSC mosaic 1.0/droSim1) | WUSTL version 1.0 | 2009-08-15 | N/A | 2014-08-29 | 80.042% |
| [url TBD 04] | droEre2 | [src TBD Drosophila erecta] | D. erecta | Feb. 2006 (Agencourt CAF1/droEre2) | Agencourt CAF1 | 2009-09-02 | N/A | 2014-08-29 | 80.023% |
| 05 | droYak3 | [src TBD Drosophila yakuba] | D. yakuba | 27 Jun 2006 (dyak_caf1/droYak3) | FlyBase GCA_000005975.1 | 2014-06-17 | 2014-06-17 | 2014-08-29 | 80.562% |
| 06 | droBia2 | [src TBD Drosophila biarmipes] | D. biarmipes | 04 Mar 2013 (Dbia_2.0/droBia2) | Baylor College of Medicine GCA_000233415.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 75.042% |
| 07 | droSuz1 | [src TBD Drosophila suzukii] | D. suzukii | 30 Sep 2013 (Dsuzukii.v01/droSuz1) | BGI GCA_000472105.1 | 2014-06-17 | 2014-06-17 | 2014-08-29 | 74.591% |
| [url TBD 08] | droAna3 | [src TBD Drosophila ananassae] | D. ananassae | Feb. 2006 (Agencourt CAF1/droAna3) | Agencourt CAF1 | 2009-09-02 | 2009-09-02 | 2014-08-29 | 67.282% |
| 09 | droBip2 | [src TBD Drosophila bipectinata] | D. bipectinata | 04 Mar 2013 (Dbip_2.0/droBip2) | Baylor College of Medicine GCA_000236285.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 65.865% |
| 10 | droEug2 | [src TBD Drosophila eugracilis] | D. eugracilis | 04 Mar 2013 (Deug_2.0/droEug2) | The modENCODE Project GCA_000236325.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 75.265% |
| 11 | droEle2 | [src TBD Drosophila elegans] | D. elegans | 04 Mar 2013 (Dele_2.0/droEle2) | Baylor College of Medicine GCA_000224195.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 75.445% |
| 12 | droKik2 | [src TBD Drosophila kikkawai] | D. kikkawai | 04 Mar 2013 (Dkik_2.0/droKik2) | Baylor College of Medicine GCA_000224215.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 70.590% |
| 13 | droTak2 | [src TBD Drosophila takahashii] | D. takahashii | 04 Mar 2013 (Dtak_2.0/droTak2) | Baylor College of Medicine GCA_000224235.2 | 2014-06-17 | 2014-06-17 | 2014-08-29 | 75.507% |
| 14 | droRho2 | [src TBD Drosophila rhopaloa] | D. rhopaloa | 22 Feb 2013 (Drho_2.0/droRho2) | The modENCODE Project GCA_000236305.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 74.940% |
| 15 | droFic2 | [src TBD Drosophila ficusphila] | D. ficusphila | 04 Mar 2013 (Dfic_2.0/droFic2) | Baylor College of Medicine GCA_000220665.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 74.740% |
| 16 | droMir2 | [src TBD Drosophila miranda] | D. miranda | 19 Apr 2013 (DroMir_2.2/droMir2) | University of California, Berkeley GCA_000269505.2 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 59.308% |
| 17 | droWil2 | [src TBD Drosophila willistoni] | D. willistoni | 03 Aug 2006 (dwil_caf1/droWil2) | J. Craig Venter Institute GCA_000005925.1 | 2014-06-17 | 2014-06-17 | 2014-08-29 | 51.432% |
| [url TBD 18] | droPer1 | [src TBD Drosophila persimilis] | D. persimilis | Oct. 2005 (Broad/droPer1) | Broad 28 Oct. 2005 | 2009-08-15 | N/A | 2014-08-29 | 59.049% |
| 19 | droPse3 | [src TBD Drosophila pseudoobscura pseudoobscura] | D. pseudoobscura | 11 Apr 2013 (Dpse_3.0/droPse3) | Baylor College of Medicine GCA_000001765.2 | 2014-06-17 | 2014-06-17 | 2014-08-29 | 59.836% |
| [url TBD 20] | droGri2 | [src TBD Drosophila grimshawi] | D. grimshawi | Feb. 2006 (Agencourt CAF1/droGri2) | Agencourt CAF1 | 2009-09-02 | N/A | 2014-08-29 | 50.979% |
| 21 | musDom2 | [src TBD Musca domestica] | M. domestica | 22 Apr 2013 (Musca_domestica-2.0.2/musDom2) | Glossina Genomes Consortium GCA_000371365.1 | 2014-06-18 | 2014-06-18 | 2014-08-29 | 19.278% |
| [url TBD 22] | anoGam1 | [src TBD Anopheles gambiae] | A. gambiae | Feb. 2003 (IAGEC MOZ2/anoGam1) | IAGEC v.MOZ2 | 2009-08-14 | N/A | 2014-08-29 | 14.452% |
| 23 | droAlb1 | [src TBD Drosophila albomicans] | D. albomicans | 21 May 2012 (DroAlb_1.0/droAlb1) | Kunming Institute of Zoology, Chinese Academy of Sciences GCA_000298335.1 | 2014-06-17 | 2014-06-17 | 2014-08-29 | 44.544% |
| [ 24] | apiMel4 | Apis mellifera | A. mellifera | 04 Nov 2010 (Amel_4.5/apiMel4) | Baylor College of Medicine | 2013-12-02 | 2013-12-02 | 2014-08-29 | 8.183% |
| [url TBD 25] | droMoj3 | [src TBD Drosophila mojavensis] | D. mojavensis | Feb. 2006 (Agencourt CAF1/droMoj3) | Agencourt CAF1 | 2009-09-02 | N/A | 2014-08-29 | 50.132% |
| [url TBD 26] | droVir3 | [src TBD Drosophila virilis] | D. virilis | Feb. 2006 (Agencourt CAF1/droVir3) | Agencourt CAF1 | 2009-09-02 | N/A | 2014-08-29 | 51.937% |
| [url TBD 27] | triCas2 | [src TBD Tribolium castaneum] | T. castaneum | Sep. 2005 (Baylor 2.0/triCas2) | Baylor | 2009-09-02 | N/A | 2014-08-29 | 14.092% |
