Encode scenarios
Tier 1 Cell LinesLaunch active Browser at this location Basic ENCODE data on the Tier 1 cell lines GM128, a lymphoid cell line and K562, a myeloid line. The tracks include RNA-seq which shows the level of expression of the gene EWSR1, the histone mark, H3K4Me, which is associated with promoters; DNAseI hypersensitivity, which is associated with regulatory regions in general; and ChIP-seq showing levels of occupancy by the transcription factor c-Fos. contributed by Jim Kent.
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Premature Stop in Reference AssemblyLaunch active Browser at this location A premature stop codon that is found in the reference genome and about half of people of European descent. The UCSC Genes track is forced to skip the codon.
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Multiple Histone MarksLaunch active Browser at this location All available histone ChIP-seq data on the two tier one cell lines. H3K4me1 is associated with enhancers and to an extent with promoters, H3K4me3 with promoters, and H3K36me3 with transcribed regions.
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TemplateLaunch active Browser at this location Description of scenario.
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