Hg38 17-way conservation alignment
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see also
- Human 17-way Hg38 17-way Genome size statistics
- Human 17-way Hg38 17-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on hg38 |
% of hg38 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | N/A | N/A |
| 02 | panTro4 | Pan troglodytes | Chimp | Feb. 2011 (CSAC 2.1.4/panTro4) | CSAC Pan_troglodytes-2.1.4 (GCA_000001515.4) | 2012-01-09 | 2012-01-09 | 2014-05-27 | 93.112% |
| 03 | panPan1 | Pan paniscus | Bonobo | May. 2012 (Max-Planck/panPan1) | Max-Planck Institute panpan1 (GCA_000258665.1) | 2013-03-05 | 2013-03-07 | 2014-12-11 | 92.929% |
| 04 | gorGor3 | Gorilla gorilla gorilla | Gorilla | May 2011 (gorGor3.1/gorGor3) | Wellcome Trust Sanger Institute May 2011 (NCBI project 31265, GCA_000151905.1) | 2011-11-16 | 2013-06-21 | 2014-12-15 | 88.005% |
| 05 | ponAbe2 | Pongo pygmaeus abelii | Orangutan | July 2007 (WUGSC 2.0.2/ponAbe2) | WUSTL 3.0 | 2009-08-15 | 2013-06-21 | 2014-09-02 | 89.187% |
| 06 | nomLeu3 | Nomascus leucogenys | Gibbon | Oct. 2012 (GGSC Nleu3.0/nomLeu3) | Gibbon Genome Sequencing Consortium | 2013-03-04 | 2013-03-01 | 2014-12-12 | 86.379% |
| 07 | nasLar1 | Nasalis larvatus | Proboscis monkey | Nov. 2014 (Charlie1.0/nasLar1) | Proboscis Monkey Functional Genome Consortium | 2014-12-12 | 2014-12-12 | 2014-12-15 | 74.541% |
| 08 | rhiRox1 | Rhinopithecus roxellana | Golden snub-nosed monkey | Oct. 2014 (Rrox_v1/rhiRox1) | Novogene | 2014-11-28 | 2014-11-27 | 2014-12-12 | 74.547% |
| 09 | chlSab2 | Chlorocebus sabaeus | Green monkey | 25 Mar-2014 (Chlorocebus_sabeus 1.1/chlSab2) | Vervet Genomics Consortium GCA_000409795.2 | 2014-04-10 | 2014-04-10 | 2014-07-11 | 84.393% |
| 10 | macFas5 | Macaca fascicularis | Crab-eating macaque | Jun 2013 (Macaca_fascicularis_5.0/macFas5) | Washington University (WashU) GCA_000364345.1 | 2013-06-30 | 2013-06-30 | 2014-12-14 | 85.675% |
| 11 | rheMac3 | Macaca mulatta | Rhesus | Oct. 2010 (BGI CR_1.0/rheMac3) | Beijing Genomics Institute, Shenzhen (GCA_000230795.1) | 2011-12-30 | 2012-01-03 | 2014-01-28 | 79.729% |
| 12 | papAnu2 | Papio anubis | Baboon | Mar. 2012 (Baylor Panu_2.0/papAnu2) | Baylor College of Medicine | 2012-07-22 | 2012-08-07 | 2014-12-13 | 84.179% |
| 13 | saiBol1 | Saimiri boliviensis | Squirrel monkey | Oct. 2011 (Broad/saiBol1) | Broad SaiBol1.0 (GCA_000235385.1) | 2012-01-07 | 2012-01-09 | 2014-12-13 | 70.565% |
| 14 | calJac3 | Callithrix jacchus | Marmoset | March 2009 (WUGSC 3.2/calJac3) | WUSTL 3.2 (GCA_000004665.1) | 2010-02-05 | 2013-06-21 | 2014-12-13 | 71.709% |
| 15 | tarSyr2 | Tarsius syrichta | Tarsier | Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) | Washington University | 2014-11-21 | 2014-11-22 | 2014-12-12 | 56.022% |
| 16 | micMur1 | Microcebus murinus | Mouse lemur | Jul. 2007 (Broad/micMur1) | Broad Institute micMur1 (NCBI project 19967, ABDC00000000) | 2009-09-02 | 2012-05-04 | 2014-12-19 | 42.653% |
| 17 | otoGar3 | Otolemur garnettii | Bushbaby | Mar. 2011 (Broad/otoGar3) | Broad Institute (GCA_000181295.3) | 2012-03-13 | 2012-03-14 | 2014-12-13 | 49.485% |
