PetMar1 conservation lastz parameters
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See Also
- Lamprey 6-way PetMar1 Genome size statistics
- Lamprey 6-way PetMar1 conservation alignment
- all other UCSC Multiple Alignments
| The default scoring matrix is: | The HoxD55 scoring matrix is: | The human-chimp.v2 scoring matrix is: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
O=400 E=30 |
O=400 E=30 |
O=600 E=150 |
do not edit, automatically generated table
| query | abridged repeats(no) |
M(0) | K(3000) | L(3000) | Q | Y(9400) | program run | E(30) | H(0) | O(400) | T(1) | chain table date |
% of petMar1 matched (chainLink table) |
% of query matched (chainLinkPetMar1) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chicken galGal3 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-14 | 2.682% | 1.931% |
| Human hg18 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-14 | 3.216% | 1.251% |
| Mouse mm9 | no | 50 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-14 | 3.132% | 1.111% |
| Medaka oryLat1 | no | 50 | 3000 | 3000 | default | 9400 | lastz | 30 | 2000 | 400 | 1 | 2009-09-02 | 2.809% | 3.568% |
| Lancelet braFlo1 | no | 0 | 2200 | 6000 | HoxD55.q | 3400 | lastz | 30 | 2000 | 400 | 1 | 2009-08-14 | 3.291% | 2.969% |
