User contributions for Hiram

18:3918:39, 25 June 2010 diff hist +8‎ Installing git ‎ adding Debian

23:0823:08, 24 June 2010 diff hist +2,801‎ N Installing git ‎ initial contents

18:3518:35, 22 June 2010 diff hist +605‎ Special:Badtitle/NS100:Done ‎ update 2010

19:0219:02, 17 June 2010 diff hist +37‎ m C. elegans alternative splice sites ‎ break into two sections current
18:5818:58, 17 June 2010 diff hist +790,740‎ C. elegans alternative splice sites ‎ adding original altSplice.EX.html links

20:5920:59, 16 June 2010 diff hist +241‎ C. elegans alternative splice sites ‎ adding ce6 data
20:5720:57, 16 June 2010 diff hist +76‎ N File:Ce6Ws190AltSpliceCustomTrack.txt ‎ the custom track reference track line for ce6/WS190 alternative splice track current
20:5520:55, 16 June 2010 diff hist +109‎ N File:Ce6.altSplice.bb ‎ Alternate splice sites lifted from WS170 track to WS190 coordinates from IntronWS120 file: altsplice.EX.html) current
20:4920:49, 16 June 2010 diff hist +241‎ C. elegans alternative splice sites ‎ adding ce4
20:4820:48, 16 June 2010 diff hist 0‎ File:Ce2Ws120AltSpliceCustomTrack.txt ‎ uploaded a new version of "Image:Ce2Ws120AltSpliceCustomTrack.txt": adding db=ce2 definition current
20:4720:47, 16 June 2010 diff hist 0‎ File:Ce4Ws140AltSpliceCustomTrack.txt ‎ uploaded a new version of "Image:Ce4Ws140AltSpliceCustomTrack.txt": adding db=ce4 definition current
20:4620:46, 16 June 2010 diff hist +76‎ N File:Ce4Ws140AltSpliceCustomTrack.txt ‎ the custom track reference track line for ce4/WS170 alternative splice track
20:4420:44, 16 June 2010 diff hist +109‎ N File:Ce4.altSplice.bb ‎ Alternate splice sites lifted from WS120 track to WS170 coordinates from IntronWS120 file: altsplice.EX.html) current
20:3920:39, 16 June 2010 diff hist 0‎ File:Ce2.altSplice.bb ‎ uploaded a new version of "Image:Ce2.altSplice.bb": Alternate splice sites from IntronWS120 file: altsplice.EX.html current
20:3420:34, 16 June 2010 diff hist 0‎ File:Ce2Ws120AltSpliceCustomTrack.txt ‎ uploaded a new version of "Image:Ce2Ws120AltSpliceCustomTrack.txt": adding visibility pack
20:3220:32, 16 June 2010 diff hist +2‎ C. elegans alternative splice sites ‎ fixup reference to properly use page
20:3020:30, 16 June 2010 diff hist +76‎ N File:Ce2Ws120AltSpliceCustomTrack.txt ‎ the custom track reference track line for ce2/WS120 alternative splice track
20:2620:26, 16 June 2010 diff hist +198‎ C. elegans alternative splice sites ‎ adding ce2 browser link
19:0219:02, 16 June 2010 diff hist 0‎ File:Ce2.altSplice.bb ‎ uploaded a new version of "Image:Ce2.altSplice.bb": Alternate splice sites from IntronWS120 file: altsplice.EX.html
18:5918:59, 16 June 2010 diff hist 0‎ File:Ce2.altSplice.bb ‎ uploaded a new version of "Image:Ce2.altSplice.bb": Alternate splice sites from IntronWS120 file: altsplice.EX.html
18:5518:55, 16 June 2010 diff hist +60‎ N C. elegans alternative splice sites ‎ beginning links
18:5218:52, 16 June 2010 diff hist +81‎ N File:Ce2.altSplice.bb ‎ Alternate splice site list for ce2/WS120 from Intronerator file altsplice.EX.html

14:4814:48, 14 June 2010 diff hist −72‎ m Genome Browser Software Features ‎ Reverted edits by Vsimon213 (Talk) to last version by Ann

16:1816:18, 10 June 2010 diff hist +633‎ Getting Started With Git ‎ installing git on a Mac OS

22:5022:50, 9 June 2010 diff hist +38‎ User:Hiram ‎ →‎To Do List

23:4123:41, 8 June 2010 diff hist +108‎ User talk:Hiram ‎ Brad Chapman
23:1123:11, 8 June 2010 diff hist +226‎ User talk:Hiram ‎ U. Penn., Mass. General Hospital
22:2722:27, 8 June 2010 diff hist +56‎ User talk:Hiram ‎ Galaxy in the cloud
22:1422:14, 8 June 2010 diff hist +136‎ User talk:Hiram ‎ Galaxy in the cloud
22:0322:03, 8 June 2010 diff hist +73‎ User talk:Hiram ‎ Complete Genomics
21:5721:57, 8 June 2010 diff hist +351‎ User talk:Hiram ‎ Pacific Biosciences, Complete Genomics
21:2121:21, 8 June 2010 diff hist +63‎ User talk:Hiram ‎ dnanexus
17:3617:36, 8 June 2010 diff hist +226‎ User talk:Hiram ‎ Chris Dagdigian
17:1117:11, 8 June 2010 diff hist +158‎ User talk:Hiram ‎ adding notes for 2010-07-08
16:1516:15, 8 June 2010 diff hist +2,028‎ Nm UCSCGeneAnnotation:hg19-10035 ‎ New page: Category:Genome Annotation Canonical gene details [http://genome.cse.ucsc.edu/cgi-bin/hgGene?hgg_chrom=none&org=Human&db=0&hgg_gene=uc002ypa.2 SOD1 uc002ypa.2] Other loci: [http://... current

00:2600:26, 26 May 2010 diff hist +89‎ UCSCGeneAnnotation:hg18-253 ‎ fix UCSC gene name link to current gene name current

23:5623:56, 21 May 2010 diff hist +10‎ Bandwidth testing ‎ fix kolossus udp numbers current
23:5023:50, 21 May 2010 diff hist −1‎ Bandwidth testing ‎ fixed up hgwdev local upd numbers
23:1023:10, 21 May 2010 diff hist −2‎ Bandwidth testing ‎ incorrectly listing altair UDP transfer

20:3720:37, 19 May 2010 diff hist +16‎ Bandwidth testing ‎ altair udp
18:2218:22, 19 May 2010 diff hist +569‎ Special:Badtitle/NS100:Done ‎ updated status
18:1118:11, 19 May 2010 diff hist +154‎ m User:Hiram ‎ updated
18:0718:07, 19 May 2010 diff hist +26‎ Bandwidth testing ‎ altair rsync
18:0518:05, 19 May 2010 diff hist +104‎ m Bandwidth testing ‎ UDT source forge
18:0318:03, 19 May 2010 diff hist +87‎ Bandwidth testing ‎ altair hive copy comment
17:5917:59, 19 May 2010 diff hist +118‎ Bandwidth testing ‎ more altair stats
17:3917:39, 19 May 2010 diff hist +92‎ Bandwidth testing ‎ adding altair

21:2221:22, 14 May 2010 diff hist −147‎ Minimal Browser Installation ‎ set the default genome
18:4518:45, 14 May 2010 diff hist +28‎ Bandwidth testing ‎ multiple copies to tmp timing
18:3818:38, 14 May 2010 diff hist +642‎ Bandwidth testing ‎ clarify procedures and multiple copies
18:2118:21, 14 May 2010 diff hist 0‎ m Bandwidth testing ‎ shm to file copy
17:1017:10, 14 May 2010 diff hist +87‎ m Bandwidth testing ‎ fixup memory units
02:2002:20, 14 May 2010 diff hist +9‎ Bandwidth testing ‎ →‎Machines tested
01:4001:40, 14 May 2010 diff hist +1‎ m Bandwidth testing ‎ mitzie upload speed

23:4623:46, 13 May 2010 diff hist +55‎ Bandwidth testing ‎ →‎Units
23:4323:43, 13 May 2010 diff hist +252‎ Bandwidth testing ‎ multiple dd copies, and add cloud0
21:5721:57, 13 May 2010 diff hist +29‎ m Bandwidth testing ‎ more udp results
19:4619:46, 13 May 2010 diff hist +71‎ Bandwidth testing ‎ adding UDT UDP
19:0719:07, 13 May 2010 diff hist +107‎ Bandwidth testing ‎ adding rsync via rsh
16:0816:08, 13 May 2010 diff hist +151‎ Bandwidth testing ‎ adding units legend

23:4523:45, 12 May 2010 diff hist +142‎ Bandwidth testing ‎ →‎Procedure
23:4423:44, 12 May 2010 diff hist +284‎ Bandwidth testing ‎ rsync notes
23:4223:42, 12 May 2010 diff hist +223‎ Bandwidth testing ‎ adding copy to hive and rsync
22:3722:37, 12 May 2010 diff hist +1,074‎ N Bandwidth testing ‎ initial contents

22:5322:53, 7 May 2010 diff hist +105‎ Unix environment ‎ fixup error in use of grep vs. egrep

19:2519:25, 6 May 2010 diff hist +38‎ Unix environment ‎ →‎See also
18:4918:49, 6 May 2010 diff hist +1,285‎ Unix environment ‎ →‎Screen
18:3118:31, 6 May 2010 diff hist +1,568‎ Unix environment ‎ →‎Screen
17:5617:56, 6 May 2010 diff hist +183‎ Unix environment ‎ adding screen

20:3420:34, 5 May 2010 diff hist −2‎ Presentation ‎ Redirecting to Presentations current
20:3120:31, 5 May 2010 diff hist +29‎ N Presentation ‎ New page: redirect to Presentations
18:5418:54, 5 May 2010 diff hist +95‎ Unix environment ‎ see also bashVsCsh.txt
18:5118:51, 5 May 2010 diff hist +51‎ Presentations ‎ 05 May 2010
18:4818:48, 5 May 2010 diff hist +9‎ Unix environment ‎ →‎grep
18:4418:44, 5 May 2010 diff hist −174‎ Unix environment ‎ different heading organization and eliminate all the em tags
18:3418:34, 5 May 2010 diff hist +2‎ Unix environment ‎ →‎See also
18:3318:33, 5 May 2010 diff hist +299‎ Unix environment ‎ rearranging awk, adding examples
18:1218:12, 5 May 2010 diff hist +1,321‎ Unix environment ‎ more awk description
17:0717:07, 5 May 2010 diff hist +257‎ Unix environment ‎ →‎Shell

23:0923:09, 4 May 2010 diff hist +454‎ Unix environment ‎ adding awk
22:2422:24, 4 May 2010 diff hist +92‎ Unix environment ‎ →‎grep
22:2022:20, 4 May 2010 diff hist +226‎ Unix environment ‎ add editor icons
22:1322:13, 4 May 2010 diff hist +1,148‎ Unix environment ‎ initial contents
21:5121:51, 4 May 2010 diff hist +78‎ Unix environment ‎ →‎Finding good commands
21:4921:49, 4 May 2010 diff hist +383‎ Unix environment ‎ section indication
21:4421:44, 4 May 2010 diff hist +162‎ Unix environment ‎ grep man page contents
21:4221:42, 4 May 2010 diff hist +1,075‎ Unix environment ‎ command introduction
21:0621:06, 4 May 2010 diff hist +389‎ Unix environment ‎ adding sed
20:5520:55, 4 May 2010 diff hist +692‎ Unix environment ‎ →‎grep

18:4218:42, 30 April 2010 diff hist +245‎ m Unix environment ‎ cut and paste desktop

23:3123:31, 29 April 2010 diff hist +762‎ Unix environment ‎ grep
23:1523:15, 29 April 2010 diff hist +317‎ Unix environment ‎ see also
23:1023:10, 29 April 2010 diff hist +499‎ Unix environment ‎ adding regular expressions
22:5022:50, 29 April 2010 diff hist +1,115‎ Unix environment ‎ editor and shell initial contents
22:2322:23, 29 April 2010 diff hist +410‎ N Unix environment ‎ initial contents

16:0816:08, 21 April 2010 diff hist +374‎ Browser Installation ‎ indicate minimal db requirements

03:4003:40, 15 April 2010 diff hist +202‎ Browser Installation ‎ trash symlinks

22:2822:28, 9 April 2010 diff hist +872‎ N How to submit a new genome ‎ initial contents
22:0922:09, 9 April 2010 diff hist +228‎ Browser Installation ‎ trackDb_localTracks
22:0522:05, 9 April 2010 diff hist −86‎ Browser Installation ‎ scripts in source tree
22:0122:01, 9 April 2010 diff hist −62‎ Browser Installation ‎ defaultGenome

16:0916:09, 7 April 2010 diff hist +156‎ Browser Installation ‎ →‎If it doesn't work...

20:4720:47, 5 April 2010 diff hist +198‎ VI quick start ‎ local .vimrc conventions

05:1205:12, 2 April 2010 diff hist +104‎ VI quick start ‎ →‎Search/Replace
04:2704:27, 2 April 2010 diff hist +60‎ VI quick start ‎ →‎Cursor movement

22:3722:37, 1 April 2010 diff hist +77‎ VI quick start ‎ →‎Insert text
22:3422:34, 1 April 2010 diff hist +60‎ VI quick start ‎ →‎Search/Replace
22:3222:32, 1 April 2010 diff hist +156‎ Browser Installation ‎ add link to src/product/scripts/
22:3122:31, 1 April 2010 diff hist +81‎ Browser Installation ‎ →‎Download database tables

23:1823:18, 31 March 2010 diff hist +1,067‎ VI quick start ‎ adding yank/put search/replace
22:5622:56, 31 March 2010 diff hist +590‎ VI quick start ‎ adding delete setting
22:4322:43, 31 March 2010 diff hist +113‎ VI quick start ‎ add see also
22:2822:28, 31 March 2010 diff hist +1,104‎ VI quick start ‎ adding insert text section and category tag
22:1422:14, 31 March 2010 diff hist +4,305‎ N VI quick start ‎ initial contents through cursor movement

16:1316:13, 24 March 2010 diff hist +103‎ Debugging cgi-scripts ‎No edit summary

18:5718:57, 19 March 2010 diff hist +1,120‎ User generated custom tracks ‎ add How To section current
18:3918:39, 19 March 2010 diff hist 0‎ m User generated custom tracks ‎ fixup hg17db reference
18:3918:39, 19 March 2010 diff hist +733‎ User generated custom tracks ‎ adding the hg17 references
18:3118:31, 19 March 2010 diff hist +151‎ N File:Hg17.customText.UCSC GGM SpecificCGIs.txt ‎ customText track definition for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 current
18:3018:30, 19 March 2010 diff hist +152‎ N File:Hg17.customText.UCSC GGM SensitiveCGIs.txt ‎ customText track definition for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 current
18:2918:29, 19 March 2010 diff hist +145‎ N File:Hg17.customText.UCSC GGM CombinedEpigeneticScore.txt ‎ customText track definition for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) current
18:2818:28, 19 March 2010 diff hist +150‎ N File:Hg17.customText.UCSC GGM BalancedCGIs.txt ‎ customText track definition for hg17 custom track: CGIs (balanced) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 current
18:2718:27, 19 March 2010 diff hist +64‎ N File:Hg17.customText.UCSC GGM All.txt ‎ customText track definition for all five data sets UCSC GGM CpGs current
18:2518:25, 19 March 2010 diff hist +135‎ N File:Hg17.UCSC GGM SpecificCGIs.bb ‎ bigBed data for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 current
18:2318:23, 19 March 2010 diff hist +136‎ N File:Hg17.UCSC GGM SensitiveCGIs.bb ‎ bigBed data for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 current
18:2218:22, 19 March 2010 diff hist +117‎ N File:Hg17.UCSC GGM OptimizedScore.bb ‎ bigBed data for hg17 custom track: Optimized score - Optimized score (high scores correspond to bona fide CpG islands current
18:2118:21, 19 March 2010 diff hist +129‎ N File:Hg17.UCSC GGM CombinedEpigeneticScore.bb ‎ bigBed data for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) current
18:1918:19, 19 March 2010 diff hist +132‎ N File:Hg17.UCSC GGM BalancedCGIs.bb ‎ bigBed data for hg17 custom track: CGIs (balanced) Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 current
18:1118:11, 19 March 2010 diff hist +450‎ User generated custom tracks ‎ adding the rest of the hg18 customText links
18:0718:07, 19 March 2010 diff hist +109‎ N File:Hg18.customText.UCSC GGM CombinedEpigeneticScore.txt ‎ customText for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) current
18:0618:06, 19 March 2010 diff hist +116‎ N File:Hg18.customText.UCSC GGM SensitiveCGIs.txt ‎ customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 current
18:0518:05, 19 March 2010 diff hist +116‎ N File:Hg18.customText.UCSC GGM SpecificCGIs.txt ‎ customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 current
18:0218:02, 19 March 2010 diff hist +146‎ User generated custom tracks ‎ adding hg18 balanced map link
18:0018:00, 19 March 2010 diff hist +132‎ N File:Hg18.customText.UCSC GGM BalancedCGIs.txt ‎ customText track definition for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 current
17:5417:54, 19 March 2010 diff hist 0‎ File:Hg18.customText.UCSC GGM All.txt ‎ uploaded a new version of "Image:Hg18.customText.UCSC GGM All.txt": customText track statements to load all five UCSC_GGM CpG custom tracks current
17:5417:54, 19 March 2010 diff hist +106‎ User generated custom tracks ‎ adding links to customText
17:4517:45, 19 March 2010 diff hist +71‎ N File:Hg18.customText.UCSC GGM All.txt ‎ customText track statements to load all five UCSC_GGM CpG custom tracks
17:3017:30, 19 March 2010 diff hist +117‎ N File:Hg18.UCSC GGM SpecificCGIs.bb ‎ bigBed data for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 current
17:3017:30, 19 March 2010 diff hist +112‎ N File:Hg18.UCSC GGM SensitiveCGIs.bb ‎ bigBed data for custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 current
17:2917:29, 19 March 2010 diff hist +5‎ File:Hg18.UCSC GGM BalancedCGIs.bb ‎ add hg18 indication current
17:2817:28, 19 March 2010 diff hist +100‎ N File:Hg18.UCSC GGM OptimizedScore.bb ‎ bigBed data for hg18 custom track: Optimized score (high scores correspond to bona fide CpG islands) current
17:2817:28, 19 March 2010 diff hist +110‎ N File:Hg18.UCSC GGM CombinedEpigeneticScore.bb ‎ bigBed data for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) current
17:2717:27, 19 March 2010 diff hist +113‎ N File:Hg18.UCSC GGM BalancedCGIs.bb ‎ bigBed data for custom track of Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5
17:2517:25, 19 March 2010 diff hist +1,175‎ N User generated custom tracks ‎ initial contents, no links yet

16:4516:45, 15 March 2010 diff hist +91‎ m Selecting a graphing track data format ‎ highly encouraged

00:3000:30, 5 March 2010 diff hist +41‎ Marmoset calJac3 13-way size statistics ‎ adding hg19 size stats
00:2900:29, 5 March 2010 diff hist +53‎ Hg19 Genome size statistics ‎ adding Marmoset
00:1600:16, 5 March 2010 diff hist +8,085‎ N Marmoset calJac3 13-way size statistics ‎ initial contents

18:4118:41, 4 March 2010 diff hist +231‎ Hg.conf ‎No edit summary

00:2500:25, 24 January 2010 diff hist −1,037‎ Main Page ‎ Undo revision 9355 garbage spam
00:2400:24, 24 January 2010 diff hist −16‎ Main Page ‎ Undo revision 9356 by garbage spam

19:0919:09, 21 January 2010 diff hist +78‎ Other genome browsers ‎ adding panda
19:0819:08, 21 January 2010 diff hist +3‎ Other genome browsers ‎ fixup Rice genome pointer

20:1620:16, 20 January 2010 diff hist +25‎ Denovo repeat finder ‎ fix link to repeat masker current
20:1420:14, 20 January 2010 diff hist +29‎ Denovo repeat finder ‎ fix link to repeat masker
20:1320:13, 20 January 2010 diff hist +67‎ Blastz ‎ add links to source tree files
20:1120:11, 20 January 2010 diff hist +5‎ m MakePushQSql.pl ‎ fix Angie link reference
20:0920:09, 20 January 2010 diff hist +78‎ Automation ‎ add links to source tree files
20:0820:08, 20 January 2010 diff hist +241‎ Automation ‎ add links to source tree files
20:0720:07, 20 January 2010 diff hist +725‎ Automation ‎ add links to source tree files
20:0220:02, 20 January 2010 diff hist +123‎ m DoEnsGeneUpdate ‎ adding link to source tree file
19:5419:54, 20 January 2010 diff hist +25‎ m Category:Java ‎ add category tag current
19:5419:54, 20 January 2010 diff hist +25‎ m Category:Images-Comparative Genomics ‎ add category tag current
19:5419:54, 20 January 2010 diff hist +25‎ m Category:Gene Set Summary Statistics ‎ add category tag current
19:5319:53, 20 January 2010 diff hist +25‎ m Category:ENCODE ‎ add category tag current
19:5319:53, 20 January 2010 diff hist +25‎ m Category:Database ‎ add category tag current
19:5219:52, 20 January 2010 diff hist +26‎ m Category:Cloud Computing ‎ add category tag current
19:4919:49, 20 January 2010 diff hist +21‎ m June ENCODE travel plans ‎ add category tag current
19:4719:47, 20 January 2010 diff hist +21‎ m Science Justice/EnergyWorlds ‎ add category tag current
19:4319:43, 20 January 2010 diff hist +27‎ m MySQL migration: 4.x to 5.0 ‎ add category tag current
19:4219:42, 20 January 2010 diff hist +27‎ m Indexed Binary Positional Data ‎ add category tag current
19:2919:29, 20 January 2010 diff hist +28‎ m Local tracks at mirror sites ‎ add category tag
19:2919:29, 20 January 2010 diff hist +203‎ m How to add a track to a mirror ‎ add link to documentation in source tree
19:2419:24, 20 January 2010 diff hist +28‎ m Migration to hive ‎ add category tag current
19:2319:23, 20 January 2010 diff hist +25‎ m QA Checklist for Cancer Browser ‎ add category tag
19:2219:22, 20 January 2010 diff hist +28‎ m HgFindSpec ‎ add category tag
19:1919:19, 20 January 2010 diff hist +28‎ m The Ensembl Browser ‎ add category tag
19:1819:18, 20 January 2010 diff hist +28‎ m Web Services & Javascript ‎ add category tag current
19:1519:15, 20 January 2010 diff hist +35‎ m Opsin evolution: key critters ‎ add category tag current
19:1419:14, 20 January 2010 diff hist +35‎ m Opsin evolution: key critters (protostomes) ‎ add category tag
18:4718:47, 20 January 2010 diff hist +28‎ m UdcFuse ‎ add category tag current
18:4518:45, 20 January 2010 diff hist +28‎ m Ensembl compara ‎ add category tag current
18:4418:44, 20 January 2010 diff hist +34‎ m Embed URL enhancements ‎ add category tag current
18:4318:43, 20 January 2010 diff hist +25‎ m Drag Selection/Zooming ‎ add category tag
18:4118:41, 20 January 2010 diff hist +28‎ m Browser Agreement Action Plan ‎ adding category current
18:4018:40, 20 January 2010 diff hist +28‎ m Blat-FAQ ‎ adding category
18:3818:38, 20 January 2010 diff hist +27‎ m Bin indexing system ‎ adding category
18:3518:35, 20 January 2010 diff hist +37‎ m Source tree compilation on Debian/Ubuntu ‎ add category tag

22:4122:41, 12 January 2010 diff hist −105‎ User:Hiram ‎ →‎To Do List
22:3622:36, 12 January 2010 diff hist +137‎ Special:Badtitle/NS100:Done ‎ starting 2010
22:3422:34, 12 January 2010 diff hist +549‎ Special:Badtitle/NS100:Done ‎ 2009 completed
22:1122:11, 12 January 2010 diff hist −3,249‎ m Talk:Main Page ‎ Reverted edits by Andromeda (Talk) to last version by Hiram current
22:0822:08, 12 January 2010 diff hist −3,251‎ m Main Page ‎ Reverted edits by Andromeda (Talk) to last version by Hiram

23:4523:45, 7 January 2010 diff hist +368‎ Download All Genomes ‎ shorter version

22:5322:53, 5 January 2010 diff hist +3‎ Presentations ‎ →‎2010
22:3822:38, 5 January 2010 diff hist 0‎ File:BME230 Winter 2010.ppt ‎ uploaded a new version of "Image:BME230 Winter 2010.ppt": Hiram Clawson, BME 230 lecture, 05,07 January 2009, introduction to the genome browser and programming with the kent source tree. current

21:4021:40, 29 December 2009 diff hist 0‎ Presentations ‎ fix link to session for the answer
21:0621:06, 29 December 2009 diff hist +357‎ Presentations ‎ starting 2010
21:0421:04, 29 December 2009 diff hist +126‎ N File:BME230 Winter 2010.ppt ‎ Hiram Clawson, BME 230 lecture, 05 January 2009, introduction to the genome browser and programming with the kent source tree.

18:4918:49, 7 December 2009 diff hist 0‎ Human/hg19/GRCh37 46-way multiple alignment ‎ rearrange section
18:4718:47, 7 December 2009 diff hist +2,541‎ Human/hg19/GRCh37 46-way multiple alignment ‎ adding corrected trees

00:0000:00, 4 December 2009 diff hist +3,937‎ Human/hg19/GRCh37 46-way multiple alignment ‎ linear format tree

23:2123:21, 3 December 2009 diff hist +504‎ Human/hg19/GRCh37 46-way multiple alignment ‎ Multiple Trees
23:0223:02, 3 December 2009 diff hist +1,564‎ Human/hg19/GRCh37 46-way multiple alignment ‎ →‎Corrected Tree
22:4522:45, 3 December 2009 diff hist +462‎ Human/hg19/GRCh37 46-way multiple alignment ‎No edit summary
22:2122:21, 3 December 2009 diff hist +165‎ N Human/hg19/GRCh37 46-way multiple alignment ‎ New page: The 46 species multiple alignment on human/hg19/GRCh37 is an extra large bit of work. A discussion of the phylogenetic trees used in the alignment is included here.

19:4719:47, 1 December 2009 diff hist +533‎ Hg19 phyloP histograms ‎ adding data table statistics current
19:4119:41, 1 December 2009 diff hist +974‎ N Hg19 phastCons histograms ‎ initial contents, three phastCons histogram graphs current
19:2519:25, 1 December 2009 diff hist +104‎ N File:PhastCons46wayPrimates.histogram.png ‎ 46-way conservation track on human genome browser hg19. phastCons histogram data for the primates subset current
19:2419:24, 1 December 2009 diff hist +112‎ N File:PhastCons46wayPlacental.histogram.png ‎ 46-way conservation track on human genome browser hg19. phastCons histogram data for all placental mammal subset current
19:2419:24, 1 December 2009 diff hist +103‎ N File:PhastCons46way.histogram.png ‎ 46-way conservation track on human genome browser hg19. phastCons histogram data for all 46 vertebrates current

19:4719:47, 30 November 2009 diff hist +335‎ Hg19 phyloP histograms ‎ adding references to histogram data
19:4019:40, 30 November 2009 diff hist +97‎ Nm Hg19 phyloP histograms ‎ showing phyloP histograms on one page
19:3719:37, 30 November 2009 diff hist +101‎ N File:PhyloP46wayPrimates.histogram.png ‎ 46-way conservation track on human genome browser hg19. phyloP histogram data for all primates subset current
19:3619:36, 30 November 2009 diff hist +109‎ N File:PhyloP46wayPlacental.histogram.png ‎ 46-way conservation track on human genome browser hg19. phyloP histogram data for all placental mammal subset current
19:3519:35, 30 November 2009 diff hist +100‎ N File:PhyloP46way.histogram.png ‎ 46-way conservation track on human genome browser hg19. phyloP histogram data for all 46 vertebrates current

18:1518:15, 18 November 2009 diff hist +80‎ m Cluster Jobs ‎ →‎Cluster Job Organization

19:5219:52, 9 November 2009 diff hist +26,072‎ Kent source utilities ‎ updated with today's version

16:3516:35, 15 October 2009 diff hist −4‎ m Build Environment Variables ‎ fix category tag

23:1123:11, 14 October 2009 diff hist +13‎ Presentations ‎ →‎2009
22:1622:16, 14 October 2009 diff hist +132‎ Presentations ‎ adding Monsanto introduction
22:1422:14, 14 October 2009 diff hist +44‎ N File:MonsatoIntroduction Oct2009.pdf ‎ Montsanto Introduction, Genecats 14 Oct 2009 current
20:4820:48, 14 October 2009 diff hist +304‎ Presentations ‎ adding genecats 2009-10-14
20:4620:46, 14 October 2009 diff hist +99‎ N File:Genecats 2009 10 14.pptx ‎ Building the kent source tree and a UCSC genome browser assembly, Genecats 2009-10-14 Hiram Clawson current
20:4620:46, 14 October 2009 diff hist +99‎ N File:Genecats 2009 10 14.ppt ‎ Building the kent source tree and a UCSC genome browser assembly, Genecats 2009-10-14 Hiram Clawson current
17:3617:36, 14 October 2009 diff hist +244‎ Learn about the Browser ‎ fixup links to kent src documents

17:5217:52, 12 October 2009 diff hist −552‎ Selecting a graphing track data format ‎ this discussion moved up the page
17:5217:52, 12 October 2009 diff hist +343‎ Selecting a graphing track data format ‎ move bigWig/bigBed discussion from below to this area
17:4817:48, 12 October 2009 diff hist +549‎ Selecting a graphing track data format ‎ add more about bigBed/bigWig

22:3922:39, 17 September 2009 diff hist +34‎ m Balloon Extension ‎ category added current
22:3822:38, 17 September 2009 diff hist +62‎ m Wiki maintenance ‎ balloon extension installed
22:3722:37, 17 September 2009 diff hist +1,504‎ N Balloon Extension ‎ example toolTip functions
22:2822:28, 17 September 2009 diff hist +29‎ N File:MultAlign.jpg ‎ Example tool tip pop up image current

18:0218:02, 27 August 2009 diff hist +45‎ Hg19 conservation alignment ‎ updated table contents
17:5817:58, 27 August 2009 diff hist +4‎ Hg19 conservation lastz parameters ‎ updated table contents
17:5417:54, 27 August 2009 diff hist +372‎ Hg19 Genome size statistics ‎ add description of other columns
17:5017:50, 27 August 2009 diff hist +5,965‎ Hg19 Genome size statistics ‎ updated table

17:4017:40, 10 August 2009 diff hist +684‎ Source Control ‎ Adding current CVS characteristics
17:3417:34, 10 August 2009 diff hist +248‎ m Source Control ‎ branching comments

20:5920:59, 3 August 2009 diff hist +1‎ m Hg19 conservation lastz parameters ‎ update loxAfr2 to loxAfr3
20:5620:56, 3 August 2009 diff hist 0‎ m Hg19 conservation alignment ‎ update loxAfr2 to loxAfr3
20:5220:52, 3 August 2009 diff hist −5‎ m Hg19 Genome size statistics ‎ update loxAfr2 to loxAfr3

18:4818:48, 29 July 2009 diff hist +159‎ m Presentations ‎ 2009-07-29 Genecats
18:4618:46, 29 July 2009 diff hist +97‎ N File:SvnForGb.pdf ‎ Mark's presentation to 2009-07-29 genecats, review of SVN subversion and how it could replace CVS current

18:3418:34, 21 July 2009 diff hist +1,065‎ Amazon Cloud Instance ‎ adding NFS information current
18:2718:27, 21 July 2009 diff hist +30‎ m Amazon Cloud Instance ‎ add category tag

22:4722:47, 16 July 2009 diff hist +128‎ m Amazon Cloud Instance ‎ add elastic IP note
22:4422:44, 16 July 2009 diff hist +2,177‎ N Amazon Cloud Instance ‎ initial contents
20:5620:56, 16 July 2009 diff hist −531‎ m Main Page ‎ Reverted edits by Freeonlinemovies (Talk) to last version by Jimkent

16:0316:03, 14 July 2009 diff hist 0‎ m Hg19 conservation alignment ‎ danRer5 updated to danRer6

21:0021:00, 13 July 2009 diff hist +3‎ m Hg19 conservation lastz parameters ‎ danRer5 updated to danRer6
20:5220:52, 13 July 2009 diff hist +1‎ m Hg19 Genome size statistics ‎ danRer5 updated to danRer6

17:4517:45, 10 July 2009 diff hist +7,123‎ N California Higher Education Budget ‎ initial contents

18:0018:00, 29 June 2009 diff hist +60‎ m Using custom track database ‎ adding extra categories

19:0819:08, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-323 ‎ update genome-test.cse to genome current
19:0819:08, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-331 ‎ update genome-test.cse to genome current
19:0719:07, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-322 ‎ update genome-test.cse to genome current
19:0619:06, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-334 ‎ update genome-test.cse to genome current
19:0619:06, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-333 ‎ update genome-test.cse to genome current
19:0519:05, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-336 ‎ update genome-test.cse to genome current
19:0419:04, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-335 ‎ update genome-test.cse to genome current
19:0319:03, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-330 ‎ update genome-test.cse to genome current
19:0219:02, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-270 ‎ update genome-test.cse to genome current
19:0119:01, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-386 ‎ update genome-test.cse to genome current
19:0019:00, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-327 ‎ update genome-test.cse to genome current
18:5918:59, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-326 ‎ update genome-test.cse to genome current
18:5818:58, 24 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-325 ‎ update genome-test.cse to genome current
17:5917:59, 24 June 2009 diff hist −206‎ m GenomeAnnotation:hg18-329 ‎ test garbage removed current
17:5917:59, 24 June 2009 diff hist +206‎ m GenomeAnnotation:hg18-329 ‎No edit summary
17:5817:58, 24 June 2009 diff hist −127‎ m GenomeAnnotation:hg18-329 ‎ remove test garbage, correct genome-test.cse to genome

22:2622:26, 23 June 2009 diff hist −9‎ m UCSCGeneAnnotation:hg18-253 ‎ update genome-test.cse to genome
22:1222:12, 23 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-332 ‎ update genome-test.cse to genome current
22:0622:06, 23 June 2009 diff hist −9‎ m UCSCGeneAnnotation:hg18-358 ‎ update genome-test to genome current
21:5521:55, 23 June 2009 diff hist −9‎ m GenomeAnnotation:hg18-328 ‎ changing link to RR system current
21:4221:42, 23 June 2009 diff hist +118‎ m GenomeAnnotation:hg18-329 ‎No edit summary
17:2617:26, 23 June 2009 diff hist +846‎ Special:Badtitle/NS100:Done ‎ updated to June

22:5122:51, 16 June 2009 diff hist +33‎ m User talk:Hiram ‎ smugmug
22:2722:27, 16 June 2009 diff hist +206‎ m User talk:Hiram ‎ AWS Amazon notes

21:5921:59, 9 June 2009 diff hist +5‎ m Hg19 conservation lastz parameters ‎ Guinea Pig done
21:5721:57, 9 June 2009 diff hist +6‎ m Hg19 conservation alignment ‎ Guinea Pig done
21:5521:55, 9 June 2009 diff hist +4‎ m Hg19 Genome size statistics ‎ Guinea Pig done

16:5416:54, 8 June 2009 diff hist 0‎ Hg19 conservation alignment ‎ status update all alignments done
16:5216:52, 8 June 2009 diff hist +35‎ Hg19 conservation lastz parameters ‎ status update all alignments done
16:5016:50, 8 June 2009 diff hist +38‎ Hg19 Genome size statistics ‎ status update almost done

22:1622:16, 4 June 2009 diff hist +1,334‎ Hg19 conservation lastz parameters ‎ status update, now with swap chainLink coverage

17:4017:40, 2 June 2009 diff hist −1,864‎ Hg19 conservation lastz parameters ‎ status update
17:2717:27, 2 June 2009 diff hist +11‎ m Hg19 conservation alignment ‎ status update
17:2317:23, 2 June 2009 diff hist +6‎ m Hg19 Genome size statistics ‎ status update

16:3016:30, 1 June 2009 diff hist +1,906‎ Hg19 conservation lastz parameters ‎ status update
16:2816:28, 1 June 2009 diff hist +31‎ Hg19 conservation alignment ‎ status update
16:2516:25, 1 June 2009 diff hist +40‎ Hg19 Genome size statistics ‎ status update

21:2321:23, 30 May 2009 diff hist −6‎ Hg19 Genome size statistics ‎ status update
21:2121:21, 30 May 2009 diff hist +51‎ Hg19 conservation lastz parameters ‎ status update
21:1921:19, 30 May 2009 diff hist +50‎ Hg19 conservation alignment ‎ status update

17:3717:37, 29 May 2009 diff hist +35‎ Hg19 conservation alignment ‎ /status update
17:3317:33, 29 May 2009 diff hist +441‎ Hg19 conservation lastz parameters ‎ status update all DEF files not available
17:3017:30, 29 May 2009 diff hist +2‎ Hg19 Genome size statistics ‎ status update
00:1700:17, 29 May 2009 diff hist +630‎ Hg19 conservation lastz parameters ‎ status update and now in phylo order
00:1200:12, 29 May 2009 diff hist −373‎ Hg19 Genome size statistics ‎ updated status and now in phylo distance order
00:0900:09, 29 May 2009 diff hist −212‎ Hg19 conservation alignment ‎ status update and different order

23:2623:26, 27 May 2009 diff hist +500‎ Hg19 conservation lastz parameters ‎ status update
23:2123:21, 27 May 2009 diff hist +28‎ Hg19 Genome size statistics ‎ status update
23:1823:18, 27 May 2009 diff hist +42‎ Hg19 conservation alignment ‎ update status

23:1523:15, 26 May 2009 diff hist +118‎ Hg19 conservation alignment ‎ status update
23:1323:13, 26 May 2009 diff hist +2,039‎ Hg19 conservation lastz parameters ‎ status update
23:0923:09, 26 May 2009 diff hist +4‎ m Hg19 Genome size statistics ‎ status update
17:3817:38, 26 May 2009 diff hist +18‎ m Hg19 Genome size statistics ‎ some updates

22:0122:01, 23 May 2009 diff hist +2,587‎ Genome size statistics ‎ adding chain minScore and linearGap options

23:3623:36, 22 May 2009 diff hist +2,816‎ Hg19 Genome size statistics ‎ update status and add chain minScore and linearGap

23:2823:28, 20 May 2009 diff hist +123‎ Hg19 conservation alignment ‎ updated status
23:2723:27, 20 May 2009 diff hist +1,743‎ Hg19 conservation lastz parameters ‎ updated status
23:2523:25, 20 May 2009 diff hist +124‎ Hg19 Genome size statistics ‎ updated status

16:2616:26, 14 May 2009 diff hist +298‎ m Hg19 conservation lastz parameters ‎ status update
16:1916:19, 14 May 2009 diff hist +60‎ m Hg19 conservation alignment ‎ status update
16:1116:11, 14 May 2009 diff hist −8‎ m Hg19 Genome size statistics ‎ dog status
16:1016:10, 14 May 2009 diff hist +56‎ m Hg19 Genome size statistics ‎ updated progress

19:2819:28, 13 May 2009 diff hist +35‎ m Hg19 conservation alignment ‎ add category tag
19:2719:27, 13 May 2009 diff hist +35‎ m Hg19 Genome size statistics ‎ add category tag
19:2619:26, 13 May 2009 diff hist +35‎ m Hg18 44way blastz parameters ‎ add category tag
19:2519:25, 13 May 2009 diff hist +28‎ m Hg18 44way blastz parameters ‎ improve hg18 size link
19:2419:24, 13 May 2009 diff hist +35‎ m Genome size statistics ‎ add category tag
19:2319:23, 13 May 2009 diff hist +28‎ m Hg18 44way alignment ‎ improve hg18 size link
19:2119:21, 13 May 2009 diff hist +35‎ m Hg18 44way alignment ‎ add category tag
19:1519:15, 13 May 2009 diff hist +35‎ m Hg19 conservation lastz parameters ‎ add category tag
19:1219:12, 13 May 2009 diff hist +200‎ m Hg19 Genome size statistics ‎ baboon entry updated
18:5218:52, 13 May 2009 diff hist +5,213‎ Hg19 conservation lastz parameters ‎ initial table contents
18:4818:48, 13 May 2009 diff hist +289‎ Nm Hg19 conservation lastz parameters ‎ initial page header
18:1818:18, 13 May 2009 diff hist +12,568‎ Hg19 conservation alignment ‎ initial table contents
18:0518:05, 13 May 2009 diff hist +367‎ Nm Hg19 conservation alignment ‎ initial page header
18:0218:02, 13 May 2009 diff hist −341‎ m Hg18 44way alignment ‎ removed sanity check note, no longer relevant
17:4517:45, 13 May 2009 diff hist +130‎ m Hg18 44way blastz parameters ‎ add links to hg19 business
17:4417:44, 13 May 2009 diff hist +130‎ m Hg18 44way alignment ‎ add links to hg19 business
17:4317:43, 13 May 2009 diff hist +130‎ m Genome size statistics ‎ add links to hg19 business
16:5816:58, 13 May 2009 diff hist +14,764‎ Hg19 Genome size statistics ‎ initial table contents
16:5416:54, 13 May 2009 diff hist +140‎ m Hg19 Genome size statistics ‎ provide links to hg18 business
16:5216:52, 13 May 2009 diff hist +588‎ N Hg19 Genome size statistics ‎ starting hg19 conservation alignments

17:2417:24, 28 April 2009 diff hist +30‎ m Example Amazon cloud cost ‎ add cat tag current
17:2417:24, 28 April 2009 diff hist +30‎ m Rsync transfer rates ‎ add cat tag current

16:4416:44, 22 April 2009 diff hist +341‎ Rsync transfer rates ‎ add comments
16:3716:37, 22 April 2009 diff hist +13‎ Rsync transfer rates ‎ fixup list
16:3316:33, 22 April 2009 diff hist +831‎ N Rsync transfer rates ‎ initial contents

20:5320:53, 21 April 2009 diff hist +2,964‎ N Example Amazon cloud cost ‎ initial contents

23:5023:50, 3 April 2009 diff hist +82‎ m Amazon EC2 cloud setup ‎ snapshot pending current
23:1023:10, 3 April 2009 diff hist +358‎ Amazon Instance configuration ‎ user account creation current
22:4522:45, 3 April 2009 diff hist +30‎ m Amazon Instance configuration ‎ add category tag
22:4422:44, 3 April 2009 diff hist +1,128‎ N Amazon Instance configuration ‎ initial contents
21:5521:55, 3 April 2009 diff hist +25‎ Nm Category:Cloud Computing ‎ initial contents
21:5521:55, 3 April 2009 diff hist +30‎ m Amazon EC2 cloud setup ‎ adding category
21:4421:44, 3 April 2009 diff hist +106‎ m Amazon EC2 cloud setup ‎ avoid accounting charges, turn out the lights
21:2221:22, 3 April 2009 diff hist +3‎ m Amazon EC2 cloud setup ‎ minor edit
20:0720:07, 3 April 2009 diff hist +606‎ Amazon EC2 cloud setup ‎ creating a snapshot
18:0918:09, 3 April 2009 diff hist +1,762‎ m Amazon EC2 cloud setup ‎ adding snapshot mount information
17:2017:20, 3 April 2009 diff hist −17‎ m Amazon EC2 cloud setup ‎ minor edit

23:2323:23, 2 April 2009 diff hist +121‎ Amazon EC2 cloud setup ‎ turning off the image
23:0323:03, 2 April 2009 diff hist −1‎ m Amazon EC2 cloud setup ‎ minor edit
23:0223:02, 2 April 2009 diff hist +4,161‎ N Amazon EC2 cloud setup ‎ initial contents

23:1823:18, 25 March 2009 diff hist −61‎ Opsin evolution: update blog ‎ remove self reference link to this page, leave label for reference in bold
23:1423:14, 25 March 2009 diff hist −95‎ Opsin evolution ‎ remove garbage from the middle of Gallus gallus XM_001234388 protein sequence
23:1123:11, 25 March 2009 diff hist −34‎ Pegasoferae? ‎ fixup absolute URL reference
23:0923:09, 25 March 2009 diff hist −34‎ Pegasoferae? ‎ fixup absolute URL reference
23:0723:07, 25 March 2009 diff hist −34‎ Pegasoferae? ‎ fixup absolute URL reference
23:0423:04, 25 March 2009 diff hist −102‎ UCSCGeneAnnotation:hg18-358 ‎ fixup absolute URL references
22:3622:36, 25 March 2009 diff hist −29‎ Embed URL enhancements ‎ fixup absolute URL reference
22:3422:34, 25 March 2009 diff hist −95‎ Opsin evolution: Encephalopsin gene loss ‎ remove garbage from the middle of Gallus gallus XM_001234388 protein sequence
21:1521:15, 25 March 2009 diff hist −13‎ Archived assemblies ‎ fixup absolute URL reference
21:1321:13, 25 March 2009 diff hist −8‎ Fubar:LDAP auth ‎ fixup absolute URL reference
21:0921:09, 25 March 2009 diff hist −33‎ Learn about the Browser ‎ fixup absolute URL reference
18:3018:30, 25 March 2009 diff hist +40‎ Teal Day ‎ successfully restored Teal Day 05 to fix broken directory link current
18:2718:27, 25 March 2009 diff hist +56‎ N File:Teal Day 05.jpg ‎ Trying to recover a mysterious bogus file directory link current
18:2418:24, 25 March 2009 diff hist −38‎ Teal Day ‎ TealDay05 went missing

19:0519:05, 24 March 2009 diff hist +2,488‎ Bin indexing system ‎ adding code samples
18:5718:57, 24 March 2009 diff hist +2,855‎ N Bin indexing system ‎ initial contents

19:5019:50, 3 March 2009 diff hist −66‎ User:Hiram ‎ →‎To Do List
19:4719:47, 3 March 2009 diff hist +202‎ Special:Badtitle/NS100:Done ‎ updated through February

22:0322:03, 23 January 2009 diff hist +195‎ Special:Badtitle/NS100:Done ‎ January 2009 done
21:5921:59, 23 January 2009 diff hist +720‎ Special:Badtitle/NS100:Done ‎ Sept to Dec additions
21:4621:46, 23 January 2009 diff hist +103‎ Special:Badtitle/NS100:Done ‎ starting 2009 list
19:3619:36, 23 January 2009 diff hist +104‎ N User:TestC ‎ New page: This is a test account created by Hiram. It does not have its email verified on purpose. current

18:4118:41, 15 January 2009 diff hist −21‎ m Using custom track database ‎ remove references to the extFile table, no longer used
00:5600:56, 15 January 2009 diff hist −105‎ m Vertebrate Gene Origins ‎ fixup absolute URL references
00:5100:51, 15 January 2009 diff hist −131‎ m SECIS comparative genomics ‎ fixup absolute URL references current
00:4200:42, 15 January 2009 diff hist −140‎ m Selenoprotein evolution: update blog ‎ fixup absolute URL references current
00:3800:38, 15 January 2009 diff hist −35‎ m Personal genomics: ACTN3 ‎ fixup absolute URL reference

18:1918:19, 12 January 2009 diff hist +363‎ Nm GenomeAnnotation:hg18-386 ‎ New page: Category:Genome Annotation [http://genome-test.cse.ucsc.edu/cgi-bin/hgTracks?db=hg18&wikiTrack=pack&position=chr2:114083701-114117289 hg18 chr2:114,083,701-114,117,289] '...

17:5517:55, 8 January 2009 diff hist 0‎ Presentations ‎ proper formatting to get link on the word
17:5517:55, 8 January 2009 diff hist +182‎ Presentations ‎ add browser session link for BME230 Winter 2009
17:5117:51, 8 January 2009 diff hist 0‎ File:BME230 Winter 2009.ppt ‎ uploaded a new version of "Image:BME230 Winter 2009.ppt": Hiram Clawson, BME 230 lecture, 08 January 2009, introduction to the genome browser and programming with the kent source tree. current

01:2801:28, 4 January 2009 diff hist 0‎ Presentations ‎ correct date to 08 Jan

00:5800:58, 24 December 2008 diff hist −385‎ Opsin evolution ‎ fixup absolute URL references
00:5200:52, 24 December 2008 diff hist −105‎ Opsin evolution: Peropsin phyloSNPs ‎ fixup absolute URL references
00:5100:51, 24 December 2008 diff hist −35‎ Opsin evolution: informative indels ‎ fixup absolute URL reference
00:4900:49, 24 December 2008 diff hist −35‎ Opsin evolution: trichromatic ancestral mammal ‎ fixup absolute URL reference
00:4700:47, 24 December 2008 diff hist −35‎ Opsin evolution: transducins ‎ fixup absolute URL reference
00:4500:45, 24 December 2008 diff hist −183‎ Opsin evolution: key critters ‎ fixup absolute URL references

23:2923:29, 23 December 2008 diff hist −70‎ Opsin evolution: key critters (deuterostomes) ‎ fixup absolute URL references
23:2723:27, 23 December 2008 diff hist −70‎ Opsin evolution: key critters (cnidaria) ‎ fixup absolute URL references
23:2423:24, 23 December 2008 diff hist −35‎ Opsin evolution: ancestral introns ‎ fixup absolute URL reference
23:2023:20, 23 December 2008 diff hist −599‎ Opsin evolution: update blog ‎ reset URL references from absolute to relative
23:0423:04, 23 December 2008 diff hist −70‎ Opsin evolution: annotation tricks ‎ fixup absolute URL references
00:5600:56, 23 December 2008 diff hist 0‎ File:BME230 Winter 2009.ppt ‎ uploaded a new version of "Image:BME230 Winter 2009.ppt": Hiram Clawson, BME 230 lecture, 08 January 2009, introduction to the genome browser, table browser and programming with the kent source tree.

22:0522:05, 22 December 2008 diff hist +30‎ Presentations ‎ do html comments become indexed ?
21:5921:59, 22 December 2008 diff hist +35‎ Presentations ‎ categorize presentation into browser development

18:0918:09, 19 December 2008 diff hist +175‎ Presentations ‎ add BME230 Winter 2009 class lecture
18:0818:08, 19 December 2008 diff hist +126‎ N File:BME230 Winter 2009.ppt ‎ Hiram Clawson, BME 230 lecture, 08 January 2009, introduction to the genome browser and programming with the kent source tree.
17:4517:45, 19 December 2008 diff hist +244‎ Presentations ‎ add Frank Jacobs presentation
17:4217:42, 19 December 2008 diff hist +165‎ N File:FrankJacobs181208.ppt ‎ Frank Jacobs from Rudolf Magnus Institute of Neuroscience, University of Utrecht, The Netherlands, "Pitx3 outSMRTs Nurr1 in dopamine neuron terminal differentiation" current

22:0622:06, 17 December 2008 diff hist +112‎ Presentations ‎ add Paul Flicek 1,000 genomes project status
22:0522:05, 17 December 2008 diff hist +57‎ N File:Flicek 11 DEC 2008.pdf ‎ Paul Flicek, EBI, presenting 1,000 genomes project status current
19:4419:44, 17 December 2008 diff hist +205‎ Presentations ‎ Add Rachel's trip report from March 2008
18:5518:55, 17 December 2008 diff hist +96‎ N File:MouseAnnotAndCCDSVisitReport041608.ppt ‎ Rachel Harte summarizing Mouse Genome Annotation meeting and RefSeq/CCDS groups, NIH March 2008. current
18:4818:48, 17 December 2008 diff hist +252‎ Presentations ‎ Add Jim Kent lecture from Stanford bioinformatics conference
18:4418:44, 17 December 2008 diff hist +192‎ N File:Kent decodingEncode.ppt ‎ Jim Kent at the Computational Systems Bioinformatics Conference, Stanford CA, 27 Aug 2008. Encode, the genome browser, the table browser, the source code, a variety of subjects are discussed. current

19:0419:04, 16 December 2008 diff hist +137‎ Presentations ‎ add Jim Kent parasol presentation
19:0219:02, 16 December 2008 diff hist +93‎ N File:Kent parasolArchitecture.ppt ‎ Jim Kent genecats presentation June 2008, Parasol super computer job management system review current
18:5918:59, 16 December 2008 diff hist +213‎ Presentations ‎ adding Jim Kent all.joiner genecats presentation
18:5718:57, 16 December 2008 diff hist +131‎ N File:Kent allJoiner.ppt ‎ Jim Kent, genecats 05 July 2008 - the all.joiner file which describes the database schema relationships for the UCSC genome browser
18:4118:41, 16 December 2008 diff hist +143‎ Presentations ‎ add Rachel's ISMB 2007 summary
18:3918:39, 16 December 2008 diff hist +73‎ N File:ISMB2007TripReportGenecats.ppt ‎ Rachel Harte genecats presentation summary from ISMB 2007, Vienna Austria current
18:1718:17, 16 December 2008 diff hist +193‎ Presentations ‎ Add Neandertal mtDNA discussion
17:5417:54, 16 December 2008 diff hist +193‎ Presentations ‎ add Metcalf, Richardson Genecats
17:4717:47, 16 December 2008 diff hist +133‎ N File:Metcalf.Richardson.2008-10-15.pdf ‎ Jake Metcalf and Sarah Richardson, Genecats presentation 15 Oct 2008, ethics discussion of Bruce T. Lahn controversy from U. Chicago. current
17:3617:36, 16 December 2008 diff hist +144‎ Presentations ‎ adding Robert's BME230 Winter 2008 code talk
17:3217:32, 16 December 2008 diff hist +121‎ N File:Baertsch-code-talk.ppt ‎ BME230 lecture by Robert Baertsch, Winter 2008, 10 January 2008, genome browser introduction and kent source tree preview current

23:2023:20, 21 November 2008 diff hist +104‎ Building a new genome database ‎No edit summary
23:1823:18, 21 November 2008 diff hist +60‎ Minimal Browser Installation ‎ add see also pointer

19:5919:59, 13 November 2008 diff hist +11‎ Hg18 44way alignment ‎ update gorilla
19:5819:58, 13 November 2008 diff hist +11‎ Hg18 44way blastz parameters ‎ update gorilla date and chainLink measurement
19:5519:55, 13 November 2008 diff hist +10‎ Genome size statistics ‎ update gorilla measurements for chainLink and type of alignment for the 44-way

00:0300:03, 5 November 2008 diff hist +134‎ Hg18 44way blastz parameters ‎ update gorilla status

23:5823:58, 4 November 2008 diff hist +37‎ Hg18 44way alignment ‎ update gorilla status
23:4323:43, 4 November 2008 diff hist +1,521‎ Genome size statistics ‎ updated status, now have gorilla and alignment type

19:1219:12, 29 October 2008 diff hist +97‎ Hg18 44way blastz parameters ‎ add see also links to other related pages
19:1019:10, 29 October 2008 diff hist +62‎ Hg18 44way alignment ‎ add see also to blastz parameters
19:0919:09, 29 October 2008 diff hist +62‎ Genome size statistics ‎ add see also to blastz parameters
19:0719:07, 29 October 2008 diff hist +48‎ Hg18 44way blastz parameters ‎ add divider
19:0519:05, 29 October 2008 diff hist +10,214‎ N Hg18 44way blastz parameters ‎ initial status table
18:3718:37, 29 October 2008 diff hist +101‎ Genome size statistics ‎ added caption for hg18 matched
18:3518:35, 29 October 2008 diff hist +1,324‎ Genome size statistics ‎ updated status
18:2918:29, 29 October 2008 diff hist +2,153‎ Hg18 44way alignment ‎ updated status

19:5119:51, 17 October 2008 diff hist +71‎ Hg18 44way alignment ‎ →‎sanity
19:4719:47, 17 October 2008 diff hist −471‎ Hg18 44way alignment ‎ updated table
19:3719:37, 17 October 2008 diff hist +40‎ m Genome size statistics ‎ add link to 44way alignment information
19:3619:36, 17 October 2008 diff hist +42‎ m Hg18 44way alignment ‎ add link to size stats
19:3419:34, 17 October 2008 diff hist +146‎ m Genome size statistics ‎ minor edit
19:3219:32, 17 October 2008 diff hist −1‎ m Genome size statistics ‎ minor edit
19:3119:31, 17 October 2008 diff hist +1,317‎ Genome size statistics ‎ added common names
19:2419:24, 17 October 2008 diff hist +10,466‎ N Genome size statistics ‎ initial contents

18:0518:05, 15 October 2008 diff hist +30‎ User:Hiram ‎ →‎To Do List

23:2423:24, 14 October 2008 diff hist +384‎ Hg18 44way alignment ‎ add sanity clause
23:1623:16, 14 October 2008 diff hist +10,206‎ N Hg18 44way alignment ‎ New page: <TABLE BORDER=1> <TR> <TH> </TH> <TH>UCSC db name</TH> <TD>Scientific name</TD> <TD>Common name</TD> <TD>assembly date</TD> <TD>source version</TD> <...
16:4216:42, 14 October 2008 diff hist +99‎ User:Hiram ‎ →‎To Do List