User contributions for Max
From genomewiki
Jump to navigationJump to search
24 June 2014
- 15:0715:07, 24 June 2014 diff hist +17 Gbib development →Pushing your changes to hgwdev
- 12:5112:51, 24 June 2014 diff hist −12 Gbib release →Release
19 May 2014
- 09:0509:05, 19 May 2014 diff hist +64 T-cell epitope databases and algorithms No edit summary current
- 04:1004:10, 19 May 2014 diff hist +205 T-cell epitope databases and algorithms No edit summary
- 04:0804:08, 19 May 2014 diff hist +657 N T-cell epitope databases and algorithms Created page with "The most difficult problem in the study of T-Cells is to figure out # which peptides are displayed by the cell and # which T-Cell receptor binds to which peptide Databases of ..."
- 03:2103:21, 19 May 2014 diff hist +47 Immunogenomics No edit summary current
25 April 2014
- 13:3613:36, 25 April 2014 diff hist +36 Gbib release →Beta testing
- 13:3513:35, 25 April 2014 diff hist +9 Genome Browser in a box config →Pushing files into the box
- 13:3413:34, 25 April 2014 diff hist −2 Genome Browser in a box config →Protected tracks
- 13:3213:32, 25 April 2014 diff hist +5 Genome Browser in a box config →Updating a box
- 13:2513:25, 25 April 2014 diff hist +882 Genome Browser in a box config →Auto updates
- 13:2113:21, 25 April 2014 diff hist +17 Gbib release →Alpha testing
- 13:2013:20, 25 April 2014 diff hist −118 Gbib release →Beta testing
- 13:2013:20, 25 April 2014 diff hist +75 Gbib release →Beta testing
- 13:1713:17, 25 April 2014 diff hist +1,262 Genome Browser in a box config →Protected tracks
- 13:1013:10, 25 April 2014 diff hist +311 Gbib release No edit summary
- 13:0913:09, 25 April 2014 diff hist +1,146 Genome Browser in a box config No edit summary
- 13:0413:04, 25 April 2014 diff hist −526 Gbib release No edit summary
- 13:0313:03, 25 April 2014 diff hist +4,766 N Gbib release Created page with "== Virtual machines == The Gbib is a Ubuntu 13 VirtualBox VM with apache, mysql and the genome browser (see Preparing_VirtualBox_images). Hgwdev has Virtualbox installed an..."
- 13:0313:03, 25 April 2014 diff hist −4,726 Genome Browser in a box config Replaced content with "QA release instructions Gbib release"
- 13:0213:02, 25 April 2014 diff hist +2 Gbib development No edit summary
17 April 2014
- 13:4513:45, 17 April 2014 diff hist +206 Gbib auto updates No edit summary
- 13:4313:43, 17 April 2014 diff hist +30 Genome Browser in a box config →Release
- 13:4213:42, 17 April 2014 diff hist +83 Genome Browser in a box config →Alpha testing
- 13:4113:41, 17 April 2014 diff hist +63 Genome Browser in a box config →Alpha testing
- 13:4013:40, 17 April 2014 diff hist +416 Genome Browser in a box config →Beta testing
- 13:3813:38, 17 April 2014 diff hist +118 Genome Browser in a box config →Box release overview
14 April 2014
- 15:1815:18, 14 April 2014 diff hist +2 Genome Browser in a box config →intensive box cleaning (optional)
- 15:1315:13, 14 April 2014 diff hist +118 Genome Browser in a box config →Beta testing
11 April 2014
- 16:2116:21, 11 April 2014 diff hist +8 Genome Browser in a box config →Setup http access for testing the box
- 16:2116:21, 11 April 2014 diff hist +60 Genome Browser in a box config →Setup http access for testing the box
- 16:2016:20, 11 April 2014 diff hist +11 Genome Browser in a box config →Virtual machines
- 16:1816:18, 11 April 2014 diff hist +500 Gbib auto updates No edit summary
- 16:1116:11, 11 April 2014 diff hist −40 Genome Browser in a box config →completely cleaning the box (optional, probably only needed once per year)
- 16:1016:10, 11 April 2014 diff hist −26 Genome Browser in a box config →http access to the box from your desktop machine
- 16:1016:10, 11 April 2014 diff hist +378 Genome Browser in a box config →SSH into the box from hgwdev
- 16:0916:09, 11 April 2014 diff hist −371 Genome Browser in a box config →Box release overview
- 16:0816:08, 11 April 2014 diff hist +141 Genome Browser in a box config →Release
- 16:0516:05, 11 April 2014 diff hist +212 Gbib auto updates No edit summary
- 15:5915:59, 11 April 2014 diff hist +187 Gbib auto updates No edit summary
- 14:5614:56, 11 April 2014 diff hist +379 N Gbib auto updates Created page with "By default the Gbib checks every 5 seconds if a flag file on the hgDownload server is more recent than the date of the last update of the Gbib. If the file on hgDownload is newe..."
- 11:1611:16, 11 April 2014 diff hist +171 Genome Browser in a box config →Release
- 10:5310:53, 11 April 2014 diff hist −34 Genome Browser in a box config →Beta testing
- 10:4410:44, 11 April 2014 diff hist −15 Genome Browser in a box config →Release
- 10:4410:44, 11 April 2014 diff hist +4 Genome Browser in a box config →Release
- 10:4110:41, 11 April 2014 diff hist +47 Genome Browser in a box config →completely cleaning the box (optional, probably only needed once per year)
- 10:3710:37, 11 April 2014 diff hist +848 Genome Browser in a box config →Release
- 10:2110:21, 11 April 2014 diff hist +11 Genome Browser in a box config →Beta testing
- 10:2010:20, 11 April 2014 diff hist +28 Genome Browser in a box config →Beta testing
- 10:1910:19, 11 April 2014 diff hist +9 Genome Browser in a box config →http access to the box from your desktop machine
- 10:1910:19, 11 April 2014 diff hist −221 Genome Browser in a box config →http access to the box from your desktop machine
- 10:1810:18, 11 April 2014 diff hist +134 Genome Browser in a box config →http access to the box from your desktop machine
- 10:1810:18, 11 April 2014 diff hist +87 Genome Browser in a box config →http access to the box from your desktop machine
- 09:5409:54, 11 April 2014 diff hist +23 Gbib development →Pushing your changes directly to hgwdev
- 09:5309:53, 11 April 2014 diff hist +229 Gbib development →Pushing your changes directly to hgwdev
- 09:5109:51, 11 April 2014 diff hist +184 Gbib development No edit summary
10 April 2014
- 16:3416:34, 10 April 2014 diff hist +15 Genome Browser in a box config →Box release cycle
- 16:1716:17, 10 April 2014 diff hist +30 Genome Browser in a box config →Release
- 16:1716:17, 10 April 2014 diff hist +14 Genome Browser in a box config →Box release cycle
- 16:1616:16, 10 April 2014 diff hist +49 Genome Browser in a box config →Connecting to the box from your desktop machine
- 16:1416:14, 10 April 2014 diff hist +25 Genome Browser in a box config →SSH
- 16:1416:14, 10 April 2014 diff hist +25 Genome Browser in a box config →Virtual machines
- 16:1416:14, 10 April 2014 diff hist −1 Genome Browser in a box config →Virtual machines
- 12:2312:23, 10 April 2014 diff hist −2 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 12:2312:23, 10 April 2014 diff hist 0 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 12:2212:22, 10 April 2014 diff hist +36 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 12:2212:22, 10 April 2014 diff hist +51 Gbib development No edit summary
- 12:2012:20, 10 April 2014 diff hist +459 Gbib development No edit summary
- 12:1612:16, 10 April 2014 diff hist −77 Genome Browser in a box config →SSH
- 12:1512:15, 10 April 2014 diff hist −114 Genome Browser in a box config →Virtual machines
- 12:1412:14, 10 April 2014 diff hist +125 Gbib development →development on browserbox-dev with testing on browserbox-dev or the browserbox
- 12:1412:14, 10 April 2014 diff hist −173 Genome Browser in a box config →Box release cycle
- 12:1312:13, 10 April 2014 diff hist +64 Genome Browser in a box config →Virtual machines
- 12:1212:12, 10 April 2014 diff hist +1,207 N Gbib development Created page with "== development on browserbox-dev with testing on browserbox-dev or the browserbox == This section is for developers. It's not relevant for QA. You can start and stop browserbox..."
- 12:1212:12, 10 April 2014 diff hist −1,209 Genome Browser in a box config →development on browserbox-dev with testing on browserbox-dev or the browserbox
- 10:2210:22, 10 April 2014 diff hist +17 Genome Browser in a box config →SSH
- 10:2210:22, 10 April 2014 diff hist −116 Genome Browser in a box config →SSH
- 10:2110:21, 10 April 2014 diff hist +1 Genome Browser in a box config →Internal config
- 10:2010:20, 10 April 2014 diff hist −31 Genome Browser in a box config →beta testing on the box
- 10:2010:20, 10 April 2014 diff hist +459 Genome Browser in a box config →development on browserbox-dev with testing on browserbox-dev or the browserbox
- 10:1710:17, 10 April 2014 diff hist −211 Genome Browser in a box config →Internal config
- 10:1510:15, 10 April 2014 diff hist −404 Genome Browser in a box config →Test binaries in browserbox
- 10:1510:15, 10 April 2014 diff hist +38 Genome Browser in a box config →Beta testing
- 10:1310:13, 10 April 2014 diff hist −99 Genome Browser in a box config →Box release cycle overview
- 10:0310:03, 10 April 2014 diff hist +99 Genome Browser in a box config No edit summary
9 April 2014
- 21:2521:25, 9 April 2014 diff hist +1 Genome Browser in a box config →beta testing on the box
- 21:2421:24, 9 April 2014 diff hist +16 Genome Browser in a box config →Box release cycle
- 21:2421:24, 9 April 2014 diff hist +1,349 Genome Browser in a box config →Compile binaries in browserbox-dev
- 16:5616:56, 9 April 2014 diff hist +905 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 13:3313:33, 9 April 2014 diff hist +269 Genome Browser in a box config →Internal config
- 13:1413:14, 9 April 2014 diff hist −85 Genome Browser in a box config →SSH
- 13:1013:10, 9 April 2014 diff hist +15 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 13:0713:07, 9 April 2014 diff hist +101 Preparing VirtualBox images No edit summary
- 12:5112:51, 9 April 2014 diff hist +21 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 12:5012:50, 9 April 2014 diff hist +16 Genome Browser in a box config →Connecting to the boxes from your desktop machine
- 12:5012:50, 9 April 2014 diff hist +1,764 N Genome Browser in a box config Created page with "== Internal config == The Gbib is a ubuntu 13 linux with apache, mysql and the default tools. See Preparing_VirtualBox_images Hgwdev has virtualbox installed and two virtua..."
1 April 2014
- 15:2915:29, 1 April 2014 diff hist +206 Debugging cgi-scripts →CGI is too slow
- 08:3508:35, 1 April 2014 diff hist +994 What does Genbank contain? No edit summary current
- 08:2808:28, 1 April 2014 diff hist +344 What does Genbank contain? No edit summary
- 08:1708:17, 1 April 2014 diff hist +269 What does Genbank contain? No edit summary
- 08:1608:16, 1 April 2014 diff hist +2,355 N What does Genbank contain? Created page with "In my experience, Human Genbank consists of fragments, ends, full-length and partial full-length sequences. * fragments are cloned PCR products of mostly exons. They are rarely ..."
13 March 2014
- 12:0612:06, 13 March 2014 diff hist +1 Demo sandbox →Claimed sandbox table
- 12:0212:02, 13 March 2014 diff hist +67 Demo sandbox →Claimed sandbox table
12 March 2014
- 11:3011:30, 12 March 2014 diff hist +470 Debugging cgi-scripts →Debugging with GDB
- 11:2411:24, 12 March 2014 diff hist +62 Debugging cgi-scripts →Debugging with GDB
4 March 2014
- 10:5310:53, 4 March 2014 diff hist −8 Preparing VirtualBox images No edit summary
- 10:4810:48, 4 March 2014 diff hist +20 Source tree compilation on Debian/Ubuntu No edit summary
- 10:0510:05, 4 March 2014 diff hist +192 Preparing VirtualBox images No edit summary
- 10:0410:04, 4 March 2014 diff hist +101 Preparing VirtualBox images No edit summary
3 March 2014
- 13:5513:55, 3 March 2014 diff hist +221 Preparing VirtualBox images No edit summary
28 February 2014
- 14:1114:11, 28 February 2014 diff hist +415 Preparing VirtualBox images No edit summary
8 February 2014
- 16:0116:01, 8 February 2014 diff hist +349 Jksql failover connections No edit summary current
- 15:3815:38, 8 February 2014 diff hist +210 N Testing the browser Created page with "A list of things to test in the browser, to give sufficient code coverage: * Try all types of custom tracks * Try a track hub with all types of big files * Try assembly hub * Tr..." current
- 00:4500:45, 8 February 2014 diff hist +2,804 N Jksql failover connections Created page with "For the browser-in-a-box several changes were made to jksql.c that allow a union of two mysql servers over the same connection. They transparently look like one mysql connection ..."
16 January 2014
- 12:2212:22, 16 January 2014 diff hist +93 AutoSql No edit summary
15 January 2014
- 00:2600:26, 15 January 2014 diff hist +2 Writing a new track type No edit summary
- 00:2400:24, 15 January 2014 diff hist +24 Writing a new track type No edit summary
9 January 2014
- 09:4309:43, 9 January 2014 diff hist +1,099 Debugging cgi-scripts No edit summary
2 January 2014
- 11:5911:59, 2 January 2014 diff hist −45 Debugging cgi-scripts →CGI is too slow
- 11:5911:59, 2 January 2014 diff hist +153 Debugging cgi-scripts →Profiling with gprof
- 10:4610:46, 2 January 2014 diff hist +509 Debugging cgi-scripts →Profiling with gprof
- 10:0910:09, 2 January 2014 diff hist +823 Debugging cgi-scripts →Profiling with gprof
- 09:5909:59, 2 January 2014 diff hist +25 Debugging cgi-scripts →Profiling with gprof
- 09:5909:59, 2 January 2014 diff hist +73 Debugging cgi-scripts →Profiling with gprof
- 09:5809:58, 2 January 2014 diff hist +470 Debugging cgi-scripts No edit summary
29 October 2013
- 17:5017:50, 29 October 2013 diff hist +12 Coordinate Transforms No edit summary
25 October 2013
- 18:2218:22, 25 October 2013 diff hist +73 Preparing VirtualBox images No edit summary
24 October 2013
- 17:2717:27, 24 October 2013 diff hist +154 Preparing VirtualBox images No edit summary
- 17:2617:26, 24 October 2013 diff hist +28 Preparing VirtualBox images No edit summary
- 17:2517:25, 24 October 2013 diff hist −50 Preparing VirtualBox images No edit summary
- 17:2517:25, 24 October 2013 diff hist +230 Preparing VirtualBox images No edit summary
11 October 2013
- 23:4423:44, 11 October 2013 diff hist +22 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 23:3823:38, 11 October 2013 diff hist +111 Preparing VirtualBox images No edit summary
- 23:3623:36, 11 October 2013 diff hist +540 Preparing VirtualBox images No edit summary
- 23:1723:17, 11 October 2013 diff hist +29 Source tree compilation on Debian/Ubuntu →The fastest way ever to get a genome browser up and running on Ubuntu
- 23:1723:17, 11 October 2013 diff hist +205 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 23:1623:16, 11 October 2013 diff hist +3 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 17:3817:38, 11 October 2013 diff hist +5 Preparing VirtualBox images No edit summary
- 17:1217:12, 11 October 2013 diff hist +409 Preparing VirtualBox images No edit summary
- 16:2816:28, 11 October 2013 diff hist +135 N Preparing VirtualBox images Created page with "* apt-get install localepurge * http://ianozsvald.com/2012/07/26/using-zerofree-to-shrink-a-virtualbox-linux-image/ Shrink the disk"
- 00:3200:32, 11 October 2013 diff hist +494 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 00:0000:00, 11 October 2013 diff hist −587 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
10 October 2013
- 23:5023:50, 10 October 2013 diff hist +5 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 23:4923:49, 10 October 2013 diff hist +5 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 23:4823:48, 10 October 2013 diff hist −56 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
7 October 2013
24 September 2013
- 17:1717:17, 24 September 2013 diff hist +9 Source tree compilation on Debian/Ubuntu No edit summary
10 September 2013
- 20:1920:19, 10 September 2013 diff hist +31 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 17:4817:48, 10 September 2013 diff hist +120 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 17:4717:47, 10 September 2013 diff hist +27 Source tree compilation on Debian/Ubuntu →Run a genome browser mirror on your local machine
- 17:4717:47, 10 September 2013 diff hist +35 Source tree compilation on Debian/Ubuntu →Run the mirror
- 17:4217:42, 10 September 2013 diff hist +183 Source tree compilation on Debian/Ubuntu →Run the mirror
- 16:5916:59, 10 September 2013 diff hist +222 Source tree compilation on Debian/Ubuntu →Run the mirror
- 16:5616:56, 10 September 2013 diff hist +72 Source tree compilation on Debian/Ubuntu →Run the mirror
- 16:5416:54, 10 September 2013 diff hist +2,050 Source tree compilation on Debian/Ubuntu No edit summary
9 September 2013
- 21:3821:38, 9 September 2013 diff hist +27 Source tree compilation on Debian/Ubuntu No edit summary
- 20:2520:25, 9 September 2013 diff hist +77 Source tree compilation on Debian/Ubuntu No edit summary
28 June 2013
- 20:5920:59, 28 June 2013 diff hist +55 Starting in David's group No edit summary
- 20:5520:55, 28 June 2013 diff hist +14 Starting in David's group →For aliens in Santa Cruz
- 20:5420:54, 28 June 2013 diff hist +129 Starting in David's group No edit summary
10 June 2013
6 June 2013
- 19:3519:35, 6 June 2013 diff hist +23 Starting in David's group →Before leaving
- 19:3419:34, 6 June 2013 diff hist +105 Starting in David's group No edit summary
20 May 2013
- 20:3120:31, 20 May 2013 diff hist +130 Compile kent source as dynamic library No edit summary current
- 20:3020:30, 20 May 2013 diff hist −152 Compile kent source as dynamic library No edit summary
- 20:3020:30, 20 May 2013 diff hist +136 Compile kent source as dynamic library No edit summary
- 20:2920:29, 20 May 2013 diff hist +19 Compile kent source as dynamic library No edit summary
18 May 2013
- 18:5118:51, 18 May 2013 diff hist +248 Compile kent source as dynamic library No edit summary
- 10:2310:23, 18 May 2013 diff hist +397 Compile kent source as dynamic library No edit summary
- 09:1009:10, 18 May 2013 diff hist +127 N Compile kent source as dynamic library Created page with " cd src/lib make USE_SAMTABIX=0 USE_TABIX=0 USE_BAM=0 CFLAGS=-fPIC USE_SSL=0 gcc -shared -o kent.so *.o font/*.o -lz -lpng"
6 May 2013
- 21:2021:20, 6 May 2013 diff hist −10 Demo sandbox →Claimed sandbox table
4 May 2013
- 00:1400:14, 4 May 2013 diff hist +16 Demo sandbox →Claimed sandbox table
30 April 2013
- 21:4121:41, 30 April 2013 diff hist −33 Debugging cgi-scripts No edit summary
25 April 2013
- 01:3601:36, 25 April 2013 diff hist +4 Debugging cgi-scripts No edit summary
- 01:3401:34, 25 April 2013 diff hist +130 Debugging cgi-scripts No edit summary
2 April 2013
- 15:3715:37, 2 April 2013 diff hist +114 Source tree compilation on Debian/Ubuntu No edit summary
- 15:3315:33, 2 April 2013 diff hist +59 Source tree compilation on Debian/Ubuntu No edit summary
- 15:2715:27, 2 April 2013 diff hist −1 Source tree compilation on Debian/Ubuntu No edit summary
21 March 2013
- 22:0022:00, 21 March 2013 diff hist +184 Debugging cgi-scripts No edit summary
- 21:5721:57, 21 March 2013 diff hist −1 Debugging cgi-scripts No edit summary
- 21:5721:57, 21 March 2013 diff hist +1 Debugging cgi-scripts No edit summary
- 21:5621:56, 21 March 2013 diff hist +340 Debugging cgi-scripts No edit summary
7 February 2013
24 January 2013
21 January 2013
- 20:3320:33, 21 January 2013 diff hist +78 Whole genome alignment howto →Example, step 1: Alignments with Blastz
8 November 2012
- 18:1218:12, 8 November 2012 diff hist +108 Starting in David's group →Administrative
- 18:0918:09, 8 November 2012 diff hist +158 Starting in David's group →For aliens in Santa Cruz
- 18:0818:08, 8 November 2012 diff hist +23 Starting in David's group →For aliens in Santa Cruz
- 18:0818:08, 8 November 2012 diff hist +168 Starting in David's group →If you are an alien
- 18:0618:06, 8 November 2012 diff hist +1,057 Starting in David's group No edit summary
24 July 2012
- 07:0807:08, 24 July 2012 diff hist +171 Learn about the Browser →Making Of: How the UCSC genome annotations are created
14 June 2012
- 21:1821:18, 14 June 2012 diff hist +49 Keeping sandbox tracks separated on hgwdev No edit summary current
- 21:1721:17, 14 June 2012 diff hist +1,318 N Keeping sandbox tracks separated on hgwdev Created page with "If you want your own trackDb hierarchy whic is not in git and shows up only in your sandbox and will never appear on hgwdev there a few steps: * add another "sandbox-only" track..."
2 May 2012
18 April 2012
- 17:1017:10, 18 April 2012 diff hist +90 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 17:0917:09, 18 April 2012 diff hist −25 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 17:0917:09, 18 April 2012 diff hist 0 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 17:0917:09, 18 April 2012 diff hist +57 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 17:0817:08, 18 April 2012 diff hist +1,015 N Running your own gfServer Created page with "* If you want to run your own blat server you need a lot of spare memory on the machine * You need two servers, one for protein queries, one for normal DNA queries. * Add someth..."
- 17:0617:06, 18 April 2012 diff hist 0 Learn about the Browser →Modify your own copy of the browser
- 17:0517:05, 18 April 2012 diff hist +148 Learn about the Browser →Modify your own copy of the browser
4 April 2012
28 March 2012
20 March 2012
- 23:0823:08, 20 March 2012 diff hist +6 Writing a new track type No edit summary
12 March 2012
- 21:1021:10, 12 March 2012 diff hist +27 Writing a new track type No edit summary
- 20:0720:07, 12 March 2012 diff hist +159 Writing a new track type No edit summary
- 19:5719:57, 12 March 2012 diff hist +129 Learn about the Browser →Modify your own copy of the browser
- 19:5619:56, 12 March 2012 diff hist 0 Learn about the Browser →Use the browser website
- 19:5619:56, 12 March 2012 diff hist +121 Writing a new track type No edit summary
- 19:5419:54, 12 March 2012 diff hist +1,021 N Writing a new track type Created page with "If you have a new type of data and you want to show it up on the genome browser, you need to change many different source code files. Here are some ideas how all of it works toge..."
18 February 2012
8 January 2012
- 10:5310:53, 8 January 2012 diff hist +65 Ggplot2 No edit summary current
- 10:4810:48, 8 January 2012 diff hist +274 N Ggplot2 Created page with "* Tutorials ** https://wiki.nbic.nl/index.php/R_ggplot2_tutorial * remove the grey background of all graphs: theme_set( theme_bw() ) * Data ** you can subset the dataframe, bu..."
5 December 2011
- 18:5518:55, 5 December 2011 diff hist +116 Starting in David's group →Travel
- 18:5418:54, 5 December 2011 diff hist +15 Starting in David's group →Travel
- 18:5318:53, 5 December 2011 diff hist +179 Starting in David's group →Administrative
29 September 2011
- 17:3317:33, 29 September 2011 diff hist +18 Starting in David's group →Meetings and groups
- 17:3217:32, 29 September 2011 diff hist +99 Starting in David's group →Meetings and groups
26 September 2011
- 20:1420:14, 26 September 2011 diff hist +182 Minimal Browser Installation →Minimal Browser Installation: clarifications
2 September 2011
- 16:5416:54, 2 September 2011 diff hist +14 Starting in David's group →Meetings and groups
- 16:5416:54, 2 September 2011 diff hist +407 Starting in David's group →Meetings and groups
- 16:4816:48, 2 September 2011 diff hist +14 Starting in David's group →Meetings and groups
1 September 2011
- 00:5100:51, 1 September 2011 diff hist +46 Starting in David's group →Administrative
- 00:1700:17, 1 September 2011 diff hist +2 Starting in David's group →Santa Cruz
- 00:1700:17, 1 September 2011 diff hist +39 Starting in David's group →Santa Cruz
- 00:1600:16, 1 September 2011 diff hist −1 Starting in David's group →Santa Cruz
- 00:1600:16, 1 September 2011 diff hist +178 Starting in David's group →If you are an alien
26 August 2011
- 08:2508:25, 26 August 2011 diff hist +94 Starting in David's group No edit summary
23 August 2011
- 01:3201:32, 23 August 2011 diff hist +145 Immunogenomics papers No edit summary current
19 August 2011
- 00:2900:29, 19 August 2011 diff hist +164 Whole genome alignment howto No edit summary
18 August 2011
- 23:0523:05, 18 August 2011 diff hist +249 Starting in David's group →Meetings and groups
- 23:0323:03, 18 August 2011 diff hist +142 Starting in David's group →Administrative
- 23:0323:03, 18 August 2011 diff hist −141 Starting in David's group →Meetings and groups
- 23:0223:02, 18 August 2011 diff hist +26 Starting in David's group →Administrative
17 August 2011
- 22:4922:49, 17 August 2011 diff hist +3 Minimal Browser Installation →Minimal Browser Installation
- 22:4822:48, 17 August 2011 diff hist +1 Minimal Browser Installation →Minimal Browser Installation
- 22:4822:48, 17 August 2011 diff hist +41 Minimal Browser Installation →Minimal Browser Installation
- 22:4722:47, 17 August 2011 diff hist +158 Minimal Browser Installation →Minimal Browser Installation
- 22:4522:45, 17 August 2011 diff hist 0 Minimal Browser Installation →Minimal Browser Installation: highlighting one word
- 18:4918:49, 17 August 2011 diff hist +128 Starting in David's group →Administrative
- 18:4618:46, 17 August 2011 diff hist +36 Starting in David's group No edit summary
- 18:4618:46, 17 August 2011 diff hist +75 Starting in David's group →If you are an alien
- 18:4118:41, 17 August 2011 diff hist +239 Starting in David's group →If you are an alien
- 18:3518:35, 17 August 2011 diff hist +136 Starting in David's group No edit summary
- 18:3118:31, 17 August 2011 diff hist +91 Starting in David's group No edit summary
16 August 2011
- 21:2621:26, 16 August 2011 diff hist +257 Starting in David's group →Administrative
- 01:2201:22, 16 August 2011 diff hist +70 N IgPdb Created page with "Ihmmmune align's database * http://cgi.cse.unsw.edu.au/~ihmmune/IgPdb/" current
- 01:2101:21, 16 August 2011 diff hist +13 Immunogenomics No edit summary
12 August 2011
- 19:0219:02, 12 August 2011 diff hist +49 Starting in David's group →Genome Browser
- 19:0119:01, 12 August 2011 diff hist +3 Starting in David's group →Technical
- 19:0019:00, 12 August 2011 diff hist +975 Starting in David's group No edit summary
- 01:2901:29, 12 August 2011 diff hist +263 Learn about the Browser →Making Of: How the UCSC genome annotations are created
10 August 2011
- 22:5222:52, 10 August 2011 diff hist +109 m Minimal Browser Installation →Minimal Browser Installation: changed order
- 22:5022:50, 10 August 2011 diff hist +136 Browser Installation →Prerequisites: software and diskspace
5 August 2011
3 August 2011
- 19:0019:00, 3 August 2011 diff hist +19 Immunogenomics No edit summary
- 18:5918:59, 3 August 2011 diff hist +24 Vbase2 No edit summary current
- 18:5918:59, 3 August 2011 diff hist +169 N Vbase2 Created page with "* URL [http://www.vbase2.org/] * automatically created by BLASTING against Genbank/EMBL * more data than IMGT * lower quality? No manual annotation * only IG-V sequences"
- 18:5818:58, 3 August 2011 diff hist +5 Immunogenomics No edit summary
- 18:5718:57, 3 August 2011 diff hist +172 Immunogenomics papers No edit summary
- 18:5418:54, 3 August 2011 diff hist +71 Companies No edit summary current
2 August 2011
- 23:2323:23, 2 August 2011 diff hist +485 Starting in David's group →Administrative
- 23:2023:20, 2 August 2011 diff hist +667 Starting in David's group →Administrative
26 July 2011
- 23:0223:02, 26 July 2011 diff hist −2 m Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
23 July 2011
- 00:2600:26, 23 July 2011 diff hist +106 Starting in David's group →Administrative
- 00:2500:25, 23 July 2011 diff hist +101 Starting in David's group →Administrative
- 00:2400:24, 23 July 2011 diff hist +193 Starting in David's group →If you are an alien
20 July 2011
- 20:3720:37, 20 July 2011 diff hist +94 Starting in David's group →Technical
- 20:2420:24, 20 July 2011 diff hist +56 Starting in David's group →Technical
15 July 2011
- 22:2122:21, 15 July 2011 diff hist +224 IMGT →Intro current
- 22:2022:20, 15 July 2011 diff hist +153 IMGT →IMGT Structure
- 22:1922:19, 15 July 2011 diff hist +3 IMGT →IMGT Structure
- 22:1922:19, 15 July 2011 diff hist +57 IMGT →IMGT Structure
- 22:1822:18, 15 July 2011 diff hist +39 IMGT →Intro
- 22:1722:17, 15 July 2011 diff hist +35 Companies No edit summary
- 22:1622:16, 15 July 2011 diff hist +158 B-Cells →B-cell genomes current
- 22:1522:15, 15 July 2011 diff hist +271 B-Cells →B-cell genomes
- 22:1322:13, 15 July 2011 diff hist +126 B-Cells →B-cell genomes
14 July 2011
- 22:0522:05, 14 July 2011 diff hist +23 Immunogenomics papers No edit summary
- 22:0522:05, 14 July 2011 diff hist +126 Immunogenomics papers No edit summary
- 22:0422:04, 14 July 2011 diff hist +118 Immunogenomics papers No edit summary
- 22:0022:00, 14 July 2011 diff hist +88 Immunogenomics papers No edit summary
- 21:5821:58, 14 July 2011 diff hist +139 Companies No edit summary
- 21:5621:56, 14 July 2011 diff hist +88 Immunogenomics papers No edit summary
- 21:4921:49, 14 July 2011 diff hist +139 Immunogenomics papers No edit summary
12 July 2011
- 17:3017:30, 12 July 2011 diff hist +201 IMGT No edit summary
- 17:2717:27, 12 July 2011 diff hist +89 IMGT No edit summary
- 17:2517:25, 12 July 2011 diff hist +145 IMGT No edit summary
- 17:1117:11, 12 July 2011 diff hist +207 IMGT No edit summary
- 02:4602:46, 12 July 2011 diff hist +510 IMGT No edit summary
- 02:4302:43, 12 July 2011 diff hist +141 B-Cells →B-cell genomes
- 02:4202:42, 12 July 2011 diff hist +93 B-Cells →B-cell genomes
- 02:4102:41, 12 July 2011 diff hist +73 N Software tools Created page with "* Immune-Align: IGH@ locus, http://www.emi.unsw.edu.au/~ihmmune/index.php" current
- 02:4002:40, 12 July 2011 diff hist +22 Immunogenomics No edit summary
- 02:3902:39, 12 July 2011 diff hist +114 N Immunogenomics papers Created page with "* [http://stm.sciencemag.org/content/1/12/12ra23 Boyd et al, Fire lab] ** sequenced IGH-locus with BIOMED2 primers"
- 02:3802:38, 12 July 2011 diff hist +29 Immunogenomics No edit summary
- 02:3502:35, 12 July 2011 diff hist +61 Companies No edit summary
- 02:3002:30, 12 July 2011 diff hist +44 N Companies Created page with "* [http://www.adaptivetcr.com/ Adaptive TCR]"
- 02:3002:30, 12 July 2011 diff hist +16 Immunogenomics No edit summary
- 02:1302:13, 12 July 2011 diff hist +196 IMGT No edit summary
- 02:1202:12, 12 July 2011 diff hist +826 IMGT No edit summary
- 01:5201:52, 12 July 2011 diff hist +350 IMGT No edit summary
- 01:4801:48, 12 July 2011 diff hist +606 N IMGT Created page with "* The main reference database for immune-loci * It consists of databases, tools and additional files (e.g. ontology, some notes, etc) ** LIGM-DB: Nucleotide sequences of all kind..."
- 01:0301:03, 12 July 2011 diff hist +27 Immunogenomics No edit summary
- 01:0301:03, 12 July 2011 diff hist +887 N High-throughput sequencing and immunology Created page with "** To amplify the VDJ fragment with PCR, primers are designed for each V and each J gene in the genome ** Blood is extracted and PCR is run on the mixed cells ** The resulting DN..." current
- 01:0301:03, 12 July 2011 diff hist +4 Immunogenomics No edit summary
- 01:0201:02, 12 July 2011 diff hist +44 Immunogenomics No edit summary
- 01:0201:02, 12 July 2011 diff hist +17 Immunogenomics No edit summary
- 01:0201:02, 12 July 2011 diff hist +6,061 N B-Cells Created page with " == B-Cells == left|thumb * B-Cells recognize non-body stuff, which is called [http://en.wikipedia.org/wiki/Antigen antigen]. They do this by either binding..."
- 01:0101:01, 12 July 2011 diff hist +8 Immunogenomics No edit summary
- 01:0101:01, 12 July 2011 diff hist +3,093 N Basic Immunology Introduction Created page with "== Intro == [[File:SEM blood cells.jpg|left|thumb|An electron microscope image of normal circulating human blood. In addition to the irregularly shaped white blood cells, both re..." current
- 01:0101:01, 12 July 2011 diff hist −9,991 Immunogenomics Move this to a different page
11 July 2011
- 22:3322:33, 11 July 2011 diff hist +122 Starting in David's group →Technical
30 June 2011
- 23:0423:04, 30 June 2011 diff hist 0 Starting in David's group →Technical
- 22:5822:58, 30 June 2011 diff hist +182 Starting in David's group →Administrative
- 22:5722:57, 30 June 2011 diff hist +530 Starting in David's group →Administrative
- 22:5622:56, 30 June 2011 diff hist −530 Starting in David's group →If you are an alien
- 22:5622:56, 30 June 2011 diff hist +262 Starting in David's group →If you are an alien
- 22:5422:54, 30 June 2011 diff hist +135 Starting in David's group →Technical
- 22:5322:53, 30 June 2011 diff hist +376 Starting in David's group →If you are an alien
28 June 2011
- 22:3522:35, 28 June 2011 diff hist +87 Immunogenomics →B-cell genomes
- 22:3422:34, 28 June 2011 diff hist +95 Immunogenomics →B-cell genomes
- 22:3322:33, 28 June 2011 diff hist +108 Immunogenomics →B-Cells
- 22:3022:30, 28 June 2011 diff hist +117 Immunogenomics →B-cell genomes
- 22:2922:29, 28 June 2011 diff hist 0 Immunogenomics →B-Cells
- 22:2822:28, 28 June 2011 diff hist −1 Immunogenomics →Intro
- 22:2722:27, 28 June 2011 diff hist +64 Immunogenomics →B-Cells
- 22:2522:25, 28 June 2011 diff hist +224 Immunogenomics →B-Cells
- 22:2322:23, 28 June 2011 diff hist −37 Immunogenomics →B-Cell receptors and antibodies
- 22:2322:23, 28 June 2011 diff hist +32 Immunogenomics →B-Cells
- 22:2122:21, 28 June 2011 diff hist +1 Immunogenomics →Intro
- 22:2122:21, 28 June 2011 diff hist +94 Immunogenomics →Intro
- 22:1922:19, 28 June 2011 diff hist −534 Immunogenomics →Intro
- 22:1822:18, 28 June 2011 diff hist +71 Immunogenomics →Intro
- 22:1722:17, 28 June 2011 diff hist +698 Immunogenomics →Intro
24 June 2011
- 21:4421:44, 24 June 2011 diff hist +244 Starting in David's group →Technical
- 21:4321:43, 24 June 2011 diff hist +11 Starting in David's group No edit summary
- 21:2721:27, 24 June 2011 diff hist +862 Starting in David's group No edit summary
- 21:1121:11, 24 June 2011 diff hist +398 Starting in David's group No edit summary
22 June 2011
- 23:3723:37, 22 June 2011 diff hist +105 Immunogenomics →Basic Immunology
- 23:2723:27, 22 June 2011 diff hist +829 Immunogenomics →Intro
- 23:2323:23, 22 June 2011 diff hist −5 Immunogenomics →B-cell genomes
- 23:2223:22, 22 June 2011 diff hist +378 Immunogenomics →B-Cell receptors and antibodies
- 23:2023:20, 22 June 2011 diff hist +16 Immunogenomics →B-Cell Proteins
- 23:1923:19, 22 June 2011 diff hist +60 Immunogenomics →B-Cells
- 23:1823:18, 22 June 2011 diff hist +1,819 Immunogenomics No edit summary
- 01:4201:42, 22 June 2011 diff hist −2 Immunogenomics →B-Cells
- 01:4101:41, 22 June 2011 diff hist −9 Immunogenomics →B-Cells
- 01:4101:41, 22 June 2011 diff hist +40 Immunogenomics →B-Cells (produced by the bone marrow in humans, but discovered in the bursa of birds)
- 00:0700:07, 22 June 2011 diff hist +92 Immunogenomics →B-cell genomes
- 00:0500:05, 22 June 2011 diff hist +71 Immunogenomics →B-Cells (produced by the bone marrow in humans, but discovered in the bursa of birds)
- 00:0400:04, 22 June 2011 diff hist +28 Immunogenomics →B-Cells (produced by the bone marrow in humans, but discovered in the bursa of birds)
- 00:0300:03, 22 June 2011 diff hist +19 Immunogenomics No edit summary
- 00:0200:02, 22 June 2011 diff hist +3,629 Immunogenomics No edit summary
21 June 2011
- 22:4322:43, 21 June 2011 diff hist +1,422 Immunogenomics No edit summary
- 22:1822:18, 21 June 2011 diff hist −1 m Immunogenomics No edit summary
- 22:1822:18, 21 June 2011 diff hist 0 Immunogenomics No edit summary
- 22:1822:18, 21 June 2011 diff hist +558 N Immunogenomics Created page with "* Quick intro: ** An [http://en.wikipedia.org/wiki/Antibody|Antibody] is composed of [http://en.wikipedia.org/wiki/Immunoglobulin_heavy_chain|Heavy] and [http://en.wikipedia.org..."
16 June 2011
- 23:1823:18, 16 June 2011 diff hist +249 Many Pythons No edit summary current
- 21:0821:08, 16 June 2011 diff hist +427 N Many Pythons Created page with "Little poll on how people are using Python here: * max: python 2.7 from /hive/groups/gencode/local/bin, no additional libraries * daniel: 2.6 from in ~dzerbino * glenn: not usin..."
14 June 2011
- 00:3500:35, 14 June 2011 diff hist +74 Starting in David's group No edit summary
10 June 2011
- 21:4821:48, 10 June 2011 diff hist +305 Starting in David's group No edit summary
9 June 2011
- 21:4721:47, 9 June 2011 diff hist +272 Starting in David's group poor man's bash completion
8 June 2011
- 22:2522:25, 8 June 2011 diff hist +94 Starting in David's group No edit summary
7 June 2011
- 20:4420:44, 7 June 2011 diff hist 0 Starting in David's group No edit summary
- 20:4320:43, 7 June 2011 diff hist +550 Starting in David's group No edit summary
- 06:4606:46, 7 June 2011 diff hist +232 Starting in David's group No edit summary
- 03:0703:07, 7 June 2011 diff hist −3 Cluster Jobs →Cluster Job Organization: fixed link -> genecats
4 June 2011
- 23:2223:22, 4 June 2011 diff hist +101 Starting in David's group No edit summary
- 01:1301:13, 4 June 2011 diff hist +61 m Starting in David's group No edit summary
2 June 2011
- 22:0122:01, 2 June 2011 diff hist +169 Starting in David's group No edit summary
- 21:5421:54, 2 June 2011 diff hist +265 Starting in David's group No edit summary
- 01:3101:31, 2 June 2011 diff hist +803 N Starting in David's group New page: * Administrative ** If you're a foreigner on J1 visa: you need ISSS to get your SEVIS entry OKed before you can apply for a social security number. After this, you have to wait until a day...
26 April 2011
- 20:1720:17, 26 April 2011 diff hist +1,351 N Internal steps of the browser when you load a page New page: * When you load a page, your webbroser will send the current URL and your local cookie to Apache * The Apache webserver will execute the hgTracks binary, sending it the parameters from the...
4 April 2011
- 14:5714:57, 4 April 2011 diff hist +36 Source tree compilation on Debian/Ubuntu No edit summary
- 14:5514:55, 4 April 2011 diff hist +75 Source tree compilation on Debian/Ubuntu No edit summary
15 March 2011
- 10:2810:28, 15 March 2011 diff hist +138 N File:LoadModencode.zip added submissions.csv and trackInfo.csv, the two tables are needed to get metaInformation about tracks. Rename to .zip before using this. current
- 10:2610:26, 15 March 2011 diff hist +142 N File:LoadModencode.txt script to load all chipseq data (~400 tracks) from modencode into a local UCSC installation automatically. Rename to .py before you use this. current
14 March 2011
- 10:5510:55, 14 March 2011 diff hist +31 User:Max No edit summary
- 10:5510:55, 14 March 2011 diff hist +38 User:Max No edit summary
10 March 2011
- 16:2416:24, 10 March 2011 diff hist 0 Browser Installation →Installing a Browser Mirror on Linux
- 16:2316:23, 10 March 2011 diff hist −1 Browser Installation →Installing a Browser Mirror on Linux
- 16:2316:23, 10 March 2011 diff hist −4 Browser Installation →Installing a Browser Mirror on Linux
- 16:2216:22, 10 March 2011 diff hist 0 Browser Installation →Installing a Browser Mirror on Linux
- 16:1616:16, 10 March 2011 diff hist +17 User talk:Hiram striked out deep sea oil well blow out as no one is worried about this anymore :-)
- 15:5815:58, 10 March 2011 diff hist +175 Learn about the Browser →Modify your own copy of the browser
- 15:5615:56, 10 March 2011 diff hist 0 Learn about the Browser →Modify your own copy of the browser
- 14:5514:55, 10 March 2011 diff hist +86 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 14:5414:54, 10 March 2011 diff hist +121 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 14:5314:53, 10 March 2011 diff hist +190 Learn about the Browser →Modify your own copy of the browser
- 14:5014:50, 10 March 2011 diff hist +5 Learn about the Browser →Modify your own copy of the browser
- 14:4914:49, 10 March 2011 diff hist 0 Learn about the Browser →Modify your own copy of the browser
- 10:5010:50, 10 March 2011 diff hist +129 Learn about the Browser →Use the browser website
24 February 2011
22 February 2011
- 14:5814:58, 22 February 2011 diff hist +34 Learn about the Browser →Modify your own copy of the browser
19 February 2011
- 16:5316:53, 19 February 2011 diff hist +353 Whole genome alignment howto →Outline - Notes: corrected wrong statements about multiz
17 February 2011
- 07:2907:29, 17 February 2011 diff hist +31 File:GenbankToTables.txt No edit summary current
- 07:2807:28, 17 February 2011 diff hist +155 N File:GenbankToTables.txt script to convert genbank files to table format. Can identify the submitters of the genbank records. Please remove the .txt extension before running this.
14 February 2011
- 22:4522:45, 14 February 2011 diff hist 0 Kent source utilities No edit summary
- 22:4522:45, 14 February 2011 diff hist +2 Kent source utilities No edit summary
- 22:4422:44, 14 February 2011 diff hist −2 Kent source utilities No edit summary
- 22:4422:44, 14 February 2011 diff hist −35 Kent source utilities No edit summary
- 22:1822:18, 14 February 2011 diff hist +116 Kent source utilities No edit summary
- 22:1722:17, 14 February 2011 diff hist +3 The source tree No edit summary
- 22:1722:17, 14 February 2011 diff hist +98 The source tree No edit summary
3 February 2011
- 01:1501:15, 3 February 2011 diff hist +131 Browser Installation →Installing a Browser Mirror on Linux
30 January 2011
- 00:2000:20, 30 January 2011 diff hist +123 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1900:19, 30 January 2011 diff hist −3 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1800:18, 30 January 2011 diff hist 0 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1700:17, 30 January 2011 diff hist +2 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1200:12, 30 January 2011 diff hist +79 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1100:11, 30 January 2011 diff hist −8 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1000:10, 30 January 2011 diff hist +56 Source tree compilation on Debian/Ubuntu No edit summary
- 00:0800:08, 30 January 2011 diff hist −25 Source tree compilation on Debian/Ubuntu No edit summary
- 00:0700:07, 30 January 2011 diff hist +8 Source tree compilation on Debian/Ubuntu No edit summary
- 00:0700:07, 30 January 2011 diff hist +12 Source tree compilation on Debian/Ubuntu added libpng12
- 00:0200:02, 30 January 2011 diff hist +111 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
29 January 2011
- 23:5923:59, 29 January 2011 diff hist +127 Learn about the Browser →Use the browser website
- 23:5823:58, 29 January 2011 diff hist −97 Learn about the Browser →Use the browser website
- 23:5723:57, 29 January 2011 diff hist +295 Learn about the Browser →Use the browser website
- 23:5123:51, 29 January 2011 diff hist +128 Learn about the Browser →Developing with the UCSC API
- 23:1623:16, 29 January 2011 diff hist +90 Learn about the Browser No edit summary
28 January 2011
- 10:0710:07, 28 January 2011 diff hist +534 Hg.conf added .hg.conf instuatrioncs
23 January 2011
- 19:1919:19, 23 January 2011 diff hist +378 The Ensembl Browser →Genome data storage current
12 January 2011
- 11:2611:26, 12 January 2011 diff hist +173 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 11:2411:24, 12 January 2011 diff hist +16 LiftOver Howto No edit summary
- 11:2311:23, 12 January 2011 diff hist +35 LiftOver Howto No edit summary
- 11:2211:22, 12 January 2011 diff hist +2 LiftOver Howto No edit summary
6 January 2011
- 11:1911:19, 6 January 2011 diff hist +73 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 11:1811:18, 6 January 2011 diff hist +19 Learn about the Browser →Download the data of the genome browser (sequences and annotations)
- 11:1811:18, 6 January 2011 diff hist +24 Learn about the Browser No edit summary
5 January 2011
- 10:5510:55, 5 January 2011 diff hist +21 Minimal Browser Installation →See also
- 10:5310:53, 5 January 2011 diff hist +1 Minimal Browser Installation →See also
- 10:5310:53, 5 January 2011 diff hist +25 Minimal Browser Installation →See also: added link
4 January 2011
- 12:0312:03, 4 January 2011 diff hist −7 Other genome browsers →Other genome browsers
- 12:0312:03, 4 January 2011 diff hist +6 Other genome browsers →Other genome browsers
- 12:0312:03, 4 January 2011 diff hist −1 Other genome browsers No edit summary
10 December 2010
- 16:0816:08, 10 December 2010 diff hist +3 Wiggle BED to variableStep format conversion No edit summary
- 16:0816:08, 10 December 2010 diff hist +36 File:BedToWig.sh No edit summary current
- 16:0816:08, 10 December 2010 diff hist +112 N File:BedToWig.sh converts all bed files in current dir to wig counterparts. You must adapt the variable SPAN before running this.
- 16:0516:05, 10 December 2010 diff hist +112 Wiggle BED to variableStep format conversion No edit summary
24 November 2010
- 13:3913:39, 24 November 2010 diff hist 0 File:FixStepToBedGraph pl.txt uploaded a new version of "Image:FixStepToBedGraph pl.txt": added one comment current
- 13:3813:38, 24 November 2010 diff hist +17 File:FixStepToBedGraph pl.txt No edit summary
- 13:3613:36, 24 November 2010 diff hist 0 File:FixStepToBedGraph pl.txt uploaded a new version of "Image:FixStepToBedGraph pl.txt": Updated version: filters out track lines + can handle variableStep files
- 13:3513:35, 24 November 2010 diff hist +72 N File:FixStepToBedGraph pl v2.txt Updated version: filters out track lines + can handle variableStep files current
23 November 2010
22 November 2010
- 14:0714:07, 22 November 2010 diff hist +201 ABRF2010 Tutorial →Viewing alignments in BAM format: added note on samtools -t option
27 October 2010
- 10:1710:17, 27 October 2010 diff hist −45 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself: Updated macos link
14 October 2010
- 13:5013:50, 14 October 2010 diff hist +13 Gene id conversion No edit summary
- 13:4913:49, 14 October 2010 diff hist +129 Gene id conversion No edit summary
- 13:4913:49, 14 October 2010 diff hist +18 Gene id conversion No edit summary
- 13:4813:48, 14 October 2010 diff hist +120 Gene id conversion No edit summary
12 October 2010
- 15:2015:20, 12 October 2010 diff hist +3 CentOS notes →CentOS preparation
- 15:2015:20, 12 October 2010 diff hist +65 CentOS notes →CentOS preparation
- 13:3913:39, 12 October 2010 diff hist +417 Browser Installation →If it doesn't work...
- 13:3713:37, 12 October 2010 diff hist +99 Browser Installation →If it doesn't work...
- 13:3613:36, 12 October 2010 diff hist +114 Browser Installation →If it doesn't work...
- 13:3513:35, 12 October 2010 diff hist +171 Browser Installation →Grant Mysql rights: added direct link to readme file
- 13:3413:34, 12 October 2010 diff hist −171 Browser Installation →Download assembly database tables
- 13:3313:33, 12 October 2010 diff hist +4 Browser Installation →Download assembly database tables
- 13:3313:33, 12 October 2010 diff hist +71 Browser Installation →Download assembly database tables
- 13:3213:32, 12 October 2010 diff hist −4 Browser Installation →Download assembly database tables
- 13:3113:31, 12 October 2010 diff hist +96 The source tree No edit summary
- 13:3013:30, 12 October 2010 diff hist +61 Browser Installation →Get Executables
- 13:2813:28, 12 October 2010 diff hist +145 Browser Installation →Configure Apache server
- 10:3910:39, 12 October 2010 diff hist +216 Updating a Genome Browser Mirror No edit summary
11 October 2010
- 17:2217:22, 11 October 2010 diff hist +661 N Updating a Genome Browser Mirror New page: To update your local Genome Browser Installation: * As root, cd to your cgi-bin directory and update the cgi-bin files: cd /var/www/cgi-bin rsync -avzP rsync://hgdownload.cse.ucsc.edu...
- 17:1917:19, 11 October 2010 diff hist +1,306 Browser Installation →Configure Apache server
- 17:1917:19, 11 October 2010 diff hist −1,304 Browser Installation →Get Executables
15 September 2010
- 10:3810:38, 15 September 2010 diff hist +55 Ensembl minimum install No edit summary current
- 10:3410:34, 15 September 2010 diff hist +28 The Ensembl Browser →Documentation
- 10:3310:33, 15 September 2010 diff hist +14 The Ensembl Browser →Databases
- 10:3310:33, 15 September 2010 diff hist −105 The Ensembl Browser No edit summary
- 10:2410:24, 15 September 2010 diff hist +513 The Ensembl Browser No edit summary
14 September 2010
- 15:5915:59, 14 September 2010 diff hist +66 File:EnsemblWorkshopFiles.tar.gz No edit summary current
- 15:5915:59, 14 September 2010 diff hist 0 Ensembl data load →Set up sequences current
- 15:1215:12, 14 September 2010 diff hist −7 Ensembl data load →Set up sequences
- 15:0715:07, 14 September 2010 diff hist −5 Ensembl data load →Set up sequences
- 14:3914:39, 14 September 2010 diff hist 0 Ensembl data load →Run pipeline
- 14:3914:39, 14 September 2010 diff hist 0 Ensembl data load →Load Repeatmasker file
- 12:3912:39, 14 September 2010 diff hist −17 Ensembl data load →Run pipeline
- 12:2012:20, 14 September 2010 diff hist −4 Ensembl data load →Load Repeatmasker file
- 12:1312:13, 14 September 2010 diff hist +205 Ensembl data load No edit summary
- 12:1112:11, 14 September 2010 diff hist −89 Ensembl data load →Run pipeline
- 10:4910:49, 14 September 2010 diff hist +1,235 Ensembl data load No edit summary
- 10:4410:44, 14 September 2010 diff hist 0 File:EnsemblWorkshopFiles.tar.gz uploaded a new version of "Image:EnsemblWorkshopFiles.tar.gz": A copy of the necessary files for the Ensembl examples, from a 2010 EBI workshop organized by Bert Overduin. Extract into your home directory. Will extract into a workshop/ subdirectory an
- 10:3610:36, 14 September 2010 diff hist +274 Ensembl data load No edit summary
- 09:0609:06, 14 September 2010 diff hist −52 Ensembl data load No edit summary
- 09:0209:02, 14 September 2010 diff hist +121 Ensembl data load No edit summary
- 09:0109:01, 14 September 2010 diff hist +76 Ensembl data load →Load Repeatmasker file
- 08:5908:59, 14 September 2010 diff hist +1,176 Ensembl data load →Load Repeatmasker file
13 September 2010
- 15:5115:51, 13 September 2010 diff hist −1 Ensembl data load →Load Repeatmasker file
- 15:5015:50, 13 September 2010 diff hist +394 Ensembl data load →Load Repeatmasker file
- 15:4815:48, 13 September 2010 diff hist +355 Ensembl data load →Load Repeatmasker file
- 15:1915:19, 13 September 2010 diff hist +679 Ensembl data load No edit summary
- 15:1415:14, 13 September 2010 diff hist +140 Ensembl data load →Load Repeatmasker file
- 15:1315:13, 13 September 2010 diff hist −12 Ensembl data load →Load Repeatmasker file
- 15:1215:12, 13 September 2010 diff hist +169 Ensembl data load No edit summary
- 15:0715:07, 13 September 2010 diff hist +15 Ensembl data load No edit summary
- 15:0215:02, 13 September 2010 diff hist +323 N Ensembl data load New page: == Load Repeatmasker file == * Create a config file <code> [RepeatMask] db=repbase db_version=0129 db_file=repbase program=RepeatMask program_version=3.1.8 program_file=/path/to/repmasker...