File list
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 16:33, 28 June 2022 | Hg19.grcIncidentDb.bb (file) |  |
106 KB | Hiram | gwUploadFile upload | 867 |
| 18:34, 1 December 2021 | PAG GenArk Poster.pdf (file) |  |
1.3 MB | Brian Lee | Poster about GenArk (Genome Archive) Assembly Hubs at Plant and Animals Genomes (PAG) conference in San Diego, 2022. | 1 |
| 23:58, 27 October 2021 | CSHL 2021.pdf (file) | |
747 KB | Jairo Navarro | Genome Browser in a Cloud poster for the Cold Spring Harbor Lab virtual conference | 2 |
| 22:24, 16 June 2021 | CartVersion and cartRewrite.c.pdf (file) | |
580 KB | Dschmelt | 1 | |
| 22:32, 20 May 2021 | VGP 2021-05-21.pptx (file) | |
1.24 MB | Hiram | VGP meeting 2021-05-21 presentation, VGP assembly resources in the UCSC genome browser | 1 |
| 22:43, 4 November 2020 | Browsermap2020.pdf (file) | |
708 KB | Brian Lee | 1 | |
| 00:44, 21 October 2020 | UcscLinks.xlsx (file) | |
13 KB | Kuhn | updated links to point to later versions of dbSNP (153) and added support for links using HGVS as identifier | 2 |
| 18:37, 17 January 2020 | 2020 PAG UCSC part3.pdf (file) | |
666 KB | Brian Lee | 1 | |
| 18:36, 17 January 2020 | 2020 PAG UCSC part2.pdf (file) | |
1.28 MB | Brian Lee | 1 | |
| 18:36, 17 January 2020 | 2020 PAG UCSC part1.pdf (file) | |
1.45 MB | Brian Lee | 1 | |
| 18:32, 17 January 2020 | PAG Poster API.pdf (file) | |
1.2 MB | Brian Lee | 1 | |
| 18:31, 17 January 2020 | PAG Hubs CyVerse.pdf (file) | |
1.27 MB | Brian Lee | 1 | |
| 22:48, 26 September 2019 | ASHG 2019 Interact.pdf (file) | |
351 KB | Brian Lee | 1 | |
| 17:24, 3 September 2019 | GalGal6.grcIncidentDb.bb (file) | |
19 KB | Hiram | gwUploadFile upload | 1 |
| 00:56, 19 May 2019 | NationalYoYoMuseum ChicoCA 50.jpg (file) |  |
553 KB | Hiram | National YO YO Museum, Chico CA | 1 |
| 23:35, 7 March 2019 | UO Hubs.pdf (file) | |
1.59 MB | Brian Lee | 1 | |
| 23:33, 7 March 2019 | UO UCSC CustomTracks.pdf (file) | |
1.07 MB | Brian Lee | 1 | |
| 23:31, 7 March 2019 | UO UCSC.pdf (file) | |
1.55 MB | Brian Lee | 1 | |
| 23:27, 7 March 2019 | PAG Hubs.pdf (file) | |
1.07 MB | Brian Lee | 1 | |
| 17:33, 30 January 2019 | GalGal5.grcIncidentDb.bb (file) | |
27 KB | Hiram | gwUploadFile upload | 7 |
| 19:19, 7 January 2019 | UCSC PAG 2019 AssemblyHub.pdf (file) | |
668 KB | Brian Lee | 2 | |
| 00:49, 15 November 2018 | Browsermap2018.pdf (file) | |
682 KB | Brian Lee | 1 | |
| 18:36, 5 November 2018 | InteractTrackEnhanced.pptx (file) | |
1.8 MB | Kate | 1 | |
| 18:35, 5 November 2018 | InteractTrackEnhanced.pdf (file) | |
978 KB | Kate | 1 | |
| 21:46, 25 October 2018 | UcscLinks.xls (file) | |
13 KB | Kuhn | Updated some links to rsIDs to avoid disamiguity page. | 15 |
| 21:54, 1 October 2018 | AwsAttachVolume.sh.txt (file) |  |
4 KB | Hiram | Script for AWS instance initialization to attach a data volume to a running instance. Used in the startParaHub.sh script upon starting the machine. | 1 |
| 17:35, 26 September 2018 | OpenStackParaHubSetup.sh.txt (file) | |
8 KB | Hiram | reorganize NFS setups, parameterize the installation directory | 5 |
| 17:10, 26 September 2018 | InitParasol.sh.txt (file) | |
3 KB | Hiram | less restrictive subnet specification and separate hub/node logs in ./logs/ directory | 3 |
| 20:32, 25 September 2018 | NodeReport.sh.txt (file) | |
1 KB | Hiram | add usage message and directory argument for result file | 4 |
| 07:41, 1 September 2018 | BlatBot pl.txt (file) | |
5 KB | Galt | changed cse to soe | 4 |
| 18:00, 20 August 2018 | InteractTrack.pdf (file) | |
776 KB | Kate | 1 | |
| 17:42, 11 July 2018 | OpenStackParaNodeSetup.sh.template.txt (file) | |
4 KB | Hiram | correctly fixup /mnt filesystem for broken openstack installation, and mount /mnt/data from the hub | 2 |
| 18:14, 4 May 2018 | OpenStackStartParaNode.sh.txt (file) | |
7 KB | Chmalee | added command line argument for ssh key-pair | 2 |
| 18:13, 4 May 2018 | OpenStackStartParaHub.sh.txt (file) | |
8 KB | Chmalee | Added command line argument for ssh key-pair name | 2 |
| 17:09, 28 April 2018 | LastzProcessingTimeHistogram.png (file) |  |
53 KB | Hiram | lastz cluster compute time histogram 1,635 measurements from alignments performed at UCSC 459 measurements are less than 0.05 days (less than 1 hour) due to very small genome sizes 59 measurements are longer than 5 days processing time due to high c... | 1 |
| 23:13, 27 April 2018 | SizeVsTime.png (file) |  |
156 KB | Hiram | lastz cluster run processing time vs. genome size blue points plot times 2 days or less processing time, left axis scale 0 - 2 days red points plot times over 2 days processing time, right axis scale 0 - 70 days | 1 |
| 18:39, 24 April 2018 | UCSC BoG 2018 GtexPoster.pptx (file) | |
749 KB | Kate | 1 | |
| 18:37, 24 April 2018 | UCSC BoG 2018 GtexPoster.pdf (file) | |
732 KB | Kate | 1 | |
| 19:36, 18 April 2018 | UcscPostDoc 2018.pptx (file) | |
1.51 MB | Jairo Navarro | Powerpoint of the 2018 UCSC Postdoc Symposium made by Jairo Navarro. | 1 |
| 02:53, 6 April 2018 | ParasolInstall.sh.txt (file) | |
1 KB | Hiram | adding git fetch of automation scripts into /data/scripts/ | 3 |
| 17:39, 20 March 2018 | CyberDuck CIRM-01.png (file) |  |
53 KB | Max | 1 | |
| 18:16, 5 March 2018 | UcscPostDoc 2018.pdf (file) | |
954 KB | Jairo Navarro | Jairo's poster for the 2018 UCSC Postdoc Symposium (March 1st, 2018) | 1 |
| 19:48, 19 January 2018 | 2018 PAG Wed 1 17.pdf (file) | |
1.05 MB | Brian Lee | 1 | |
| 19:46, 19 January 2018 | CyVerseAssemblyHubsPAG2018.pdf (file) | |
1.49 MB | Brian Lee | 1 | |
| 19:41, 19 January 2018 | AssemblyHubsPAG2018.pdf (file) | |
917 KB | Brian Lee | 1 | |
| 20:41, 6 December 2017 | Browsermap2017.pdf (file) | |
242 KB | Brian Lee | Jorge Presentation of Browser Layout | 1 |
| 18:27, 31 October 2017 | GenomeInformatics2017.pages (file) | |
3.82 MB | AngieHinrichs | Mac Pages (analogous to PPT) file for Genome Informatics 2017 poster on support for HGVS terms in the Genome Browser and Variant Annotation Integrator. | 1 |
| 18:22, 31 October 2017 | GenomeInformatics2017.pdf (file) | |
1.4 MB | AngieHinrichs | Poster (36"x42") presented at Genome Informatics 2017 about support for HGVS terms in the Genome Browser and Variant Annotation Integrator | 1 |
| 22:10, 28 September 2017 | GenbankPrimates.jpg (file) |  |
113 KB | Hiram | primate phylogenetic tree from genbank taxIds Given a set of taxon IDs, utilizing [http://phylot.biobyte.de/ phylot.biobyte.de] to derive this phylogenetic tree. NOTE: not necessarily completely accurate. Image drawn by [http://itol.embl.de/ itol.embl. | 1 |
| 18:17, 2 June 2017 | Btrfs filesystem readWrite performance.png (file) |  |
120 KB | Hiram | read/write performance test results for 'btrfs' filesystem | 1 |
