File list
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 20:48, 16 June 2010 | Ce2Ws120AltSpliceCustomTrack.txt (file) |  |
172 bytes | Hiram | adding db=ce2 definition | 3 |
| 20:57, 16 June 2010 | Ce6Ws190AltSpliceCustomTrack.txt (file) | |
172 bytes | Hiram | the custom track reference track line for ce6/WS190 alternative splice track | 1 |
| 21:19, 12 May 2011 | 29mammalsConstraintStructure html.txt (file) | |
185 bytes | Brianraney | gwUploadFile upload | 2 |
| 20:47, 16 June 2010 | Ce4Ws140AltSpliceCustomTrack.txt (file) | |
194 bytes | Hiram | adding db=ce4 definition | 2 |
| 21:29, 10 August 2006 | Databases.txt (file) | |
220 bytes | Acs | File listing databases (assemblies) to be mirrored. | 1 |
| 21:30, 10 August 2006 | Gbdb exclude.txt (file) | |
243 bytes | Acs | File listing directories to be excluded when rsyncing /gbdb. | 1 |
| 18:28, 19 March 2010 | Hg17.customText.UCSC GGM BalancedCGIs.txt (file) | |
257 bytes | Hiram | customText track definition for hg17 custom track: CGIs (balanced) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 18:31, 19 March 2010 | Hg17.customText.UCSC GGM SpecificCGIs.txt (file) | |
257 bytes | Hiram | customText track definition for hg17 custom track: CGIs (specific) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:00, 19 March 2010 | Hg18.customText.UCSC GGM BalancedCGIs.txt (file) | |
257 bytes | Hiram | customText track definition for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 18:05, 19 March 2010 | Hg18.customText.UCSC GGM SpecificCGIs.txt (file) | |
257 bytes | Hiram | customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.67 | 1 |
| 18:06, 19 March 2010 | Hg18.customText.UCSC GGM SensitiveCGIs.txt (file) | |
259 bytes | Hiram | customText for hg18 custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 18:29, 19 March 2010 | Hg17.customText.UCSC GGM CombinedEpigeneticScore.txt (file) | |
272 bytes | Hiram | customText track definition for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 18:07, 19 March 2010 | Hg18.customText.UCSC GGM CombinedEpigeneticScore.txt (file) | |
272 bytes | Hiram | customText for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 20:26, 12 May 2011 | 29mammalsMotifInstances track.txt (file) | |
283 bytes | Brianraney | gwUploadFile upload | 3 |
| 20:26, 12 May 2011 | 29mammalsExaptedElements track.txt (file) | |
288 bytes | Brianraney | gwUploadFile upload | 3 |
| 16:31, 7 May 2013 | BoG2013variationSampleTrack.txt (file) | |
290 bytes | Rhead | 1 | |
| 18:30, 19 March 2010 | Hg17.customText.UCSC GGM SensitiveCGIs.txt (file) | |
296 bytes | Hiram | customText track definition for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 20:26, 12 May 2011 | 29mammalsNovelExons track.txt (file) | |
307 bytes | Brianraney | gwUploadFile upload | 3 |
| 21:38, 11 May 2011 | 29mammalsPosSelCodonsOverall track.txt (file) | |
327 bytes | Brianraney | gwUploadFile upload | 1 |
| 21:19, 12 May 2011 | 29mammalsExaptedElements html.txt (file) | |
364 bytes | Brianraney | gwUploadFile upload | 2 |
| 20:26, 12 May 2011 | 29mammalsConstraintStructure track.txt (file) | |
397 bytes | Brianraney | gwUploadFile upload | 3 |
| 16:08, 10 December 2010 | BedToWig.sh (file) |  |
422 bytes | Max | converts all bed files in current dir to wig counterparts. You must adapt the variable SPAN before running this. | 1 |
| 03:00, 17 October 2011 | SQNewEnhancersIR3+PeakAnnotation.bed (file) | |
441 bytes | Daria Merkurjev | 1 | |
| 21:19, 12 May 2011 | 29mammals2xARs html.txt (file) | |
470 bytes | Brianraney | gwUploadFile upload | 2 |
| 20:26, 12 May 2011 | 29mammals2xARs track.txt (file) | |
512 bytes | Brianraney | gwUploadFile upload | 3 |
| 21:20, 12 May 2011 | 29mammalsExcessConstraint html.txt (file) | |
516 bytes | Brianraney | gwUploadFile upload | 3 |
| 20:30, 12 May 2011 | 29mammals track.txt (file) | |
650 bytes | Brianraney | gwUploadFile upload | 4 |
| 17:17, 19 March 2015 | Create scores file control.txt (file) | |
653 bytes | Hiram | Parameters from Bob Harris for lastz tuning procedure | 1 |
| 21:20, 12 May 2011 | 29mammalsMotifInstances html.txt (file) | |
708 bytes | Brianraney | gwUploadFile upload | 2 |
| 00:51, 10 November 2015 | INSTALL RNAplot.sh (file) | |
715 bytes | David Hoover | Installation script for compiling RNAplot as a static executable. | 1 |
| 21:20, 12 May 2011 | 29mammalsNovelExons html.txt (file) | |
875 bytes | Brianraney | gwUploadFile upload | 2 |
| 04:23, 20 March 2010 | ABRF2010 ggData.png (file) |  |
892 bytes | AngieHinrichs | smaller -- the original was getting transformed down to 800 pix wide, which still didn't fit very well in 1020-pix wide browser and looked fuzzy. | 2 |
| 20:27, 12 May 2011 | 29mammalsRNAStruct track.txt (file) | |
920 bytes | Brianraney | gwUploadFile upload | 3 |
| 22:02, 3 October 2011 | SQ854Info.txt (file) | |
971 bytes | Daria Merkurjev | 1 | |
| 22:03, 3 October 2011 | SQ850tagInfo.txt (file) | |
972 bytes | Daria Merkurjev | 1 | |
| 22:02, 3 October 2011 | SQ849tagInfo.txt (file) | |
1,002 bytes | Daria Merkurjev | 1 | |
| 22:01, 3 October 2011 | SQ851tagInfo.txt (file) | |
1,002 bytes | Daria Merkurjev | 1 | |
| 21:20, 12 May 2011 | 29mammalsPosSelCodons html.txt (file) | |
1 KB | Brianraney | gwUploadFile upload | 2 |
| 20:27, 12 May 2011 | 29mammalsPosSelCodons track.txt (file) | |
1 KB | Brianraney | gwUploadFile upload | 12 |
| 22:39, 12 May 2011 | 29mammalsRNAStruct html.txt (file) | |
1 KB | Brianraney | gwUploadFile upload | 3 |
| 23:44, 25 January 2011 | ConstructLiftFile pl.txt (file) | |
1 KB | Hiram | Given a partition list from partitionSequence.pl and a chrom.sizes file, this perl script will construct a lift file to be used to lift psl query and target results from those partitions after a lastz alignment. | 1 |
| 17:35, 12 December 2006 | ParseBlatOutput zip.txt (file) | |
1 KB | Hartera | Zipped Perl script to parse the HTML output from the Blat server. | 1 |
| 21:44, 14 September 2011 | ParseBlatOutput.zip (file) | |
1 KB | Galt | 2 | |
| 18:27, 19 March 2010 | Hg17.customText.UCSC GGM All.txt (file) | |
1 KB | Hiram | customText track definition for all five data sets UCSC GGM CpGs | 1 |
| 17:54, 19 March 2010 | Hg18.customText.UCSC GGM All.txt (file) | |
1 KB | Hiram | customText track statements to load all five UCSC_GGM CpG custom tracks | 2 |
| 05:04, 20 March 2010 | ABRF2010 chr21 export 1MB.png (file) |  |
1 KB | AngieHinrichs | checkpoint image for demo/tutorial at ABRF 2010 workshop | 1 |
| 02:53, 6 April 2018 | ParasolInstall.sh.txt (file) | |
1 KB | Hiram | adding git fetch of automation scripts into /data/scripts/ | 3 |
| 20:32, 25 September 2018 | NodeReport.sh.txt (file) | |
1 KB | Hiram | add usage message and directory argument for result file | 4 |
| 04:58, 20 March 2010 | ABRF2010 TFBS.png (file) |  |
1 KB | AngieHinrichs | smaller still, sheesh | 3 |
| 20:32, 12 May 2011 | 29mammalsExcessConstraint track.txt (file) | |
1 KB | Brianraney | gwUploadFile upload | 3 |
