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- Information to help create Assembly and Track Hubs8 members (0 subcategories, 0 files) - 21:01, 23 April 2013
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- =Remote Data Track Storage for Viewing on the UCSC Genome Browser = = Introduction to Track Data Hubs =1 KB (180 words) - 21:08, 23 April 2013
- For more information about Track Data Hubs see this article. [http://bioinformatics.oxfordjournals.org/content/30/7/10 For more information about Assembly Hubs see this wiki page: [http://genomewiki.ucsc.edu/index.php/Assembly_Hubs]624 bytes (98 words) - 16:43, 19 October 2014
- For more information about Track Data Hubs see this article. [http://bioinformatics.oxfordjournals.org/content/30/7/10 For more information about Assembly Hubs see this wiki page: [http://genomewiki.ucsc.edu/index.php/Assembly_Hubs]630 bytes (100 words) - 23:28, 25 February 2015
- Information to help create Assembly and Track Hubs8 members (0 subcategories, 0 files) - 21:01, 23 April 2013
File:BoG2011.pdf UCSC Genome Browser Track Data Hubs poster: Biology of Genomes, CSHL, 2011.(11.08 MB) - 23:22, 15 September 2011- Assembly Data Hubs support viewing any sequence on the UCSC Genome Browser. Assembly Data Hubs allow anyone to use the UCSC Genome Browser to view3 KB (479 words) - 13:56, 1 November 2013
- ...o the genome browser. The preferred system for doing this is called "track hubs", stored on user's own webserver. The older system for adding tracks is cal ...ks have an entry "ctfile_<db>" for every database with at least one custom track in the cart, e.g. "ctfile_hg19". An example file name is "ctfile_hg19 ../tr1 KB (192 words) - 16:23, 7 December 2018
- ...are trying to create [https://genome.ucsc.edu/cgi-bin/hgHubConnect Public Hubs]. If you’ve created a hub that you feel meets these requirements and is o (As a reference for interpreting trackDb.txt settings use the ''Hub Track Database Definition'' [http://genome.ucsc.edu/goldenPath/help/trackDb/track16 KB (2,420 words) - 23:28, 22 February 2023
- Construct bigBed file to display in a track/assembly hub genome browser. The track hub trackDb.txt entry is:4 KB (534 words) - 21:04, 23 April 2013
- ==Big Bed track hub files== Your track hub trackDb.txt stanzas:4 KB (578 words) - 21:02, 23 April 2013
- ...ually a row in a track table. A relationship links together fields in the track/table rows. === Abstract notion of a data track ===6 KB (997 words) - 19:18, 20 January 2010
- Track hub trackDb.txt entries: track assembly_6 KB (966 words) - 21:01, 23 April 2013
- ...not on the main UCSC Browser, but mostly also contained in the Track Data Hubs at UCSC. * [http://old-gander.wustl.edu/gonramphubs/index.html various hubs] At WashU for: <I>Amazona vittata</I> (Puerto Rican Parrot), <I>Chlamydomon8 KB (1,205 words) - 17:51, 14 February 2018
- ...y are too wide for your window, try clicking the "resize" button below the track image. * UCSC Genome Browser Data Hubs. Zweig AS ''et al.'' Biology of Genomes, 2011 [http://users.soe.ucsc.edu/~a3 KB (381 words) - 00:23, 1 September 2018
- ::* The Genome Browser User Guide has more information on Annotation track descriptions. ::* The track search help page has information on searching tracks12 KB (1,969 words) - 16:01, 6 October 2020
- ==Construct bigBed track files== the item in the track:6 KB (847 words) - 20:36, 2 July 2015
- ==Track hub trackDb.txt== track cpgIslandExt_5 KB (680 words) - 21:02, 23 April 2013
- ....edu/goldenPath/help/hgTracksHelp.html#CustomTracks How to create a custom track] * [[GBiB: From download to BLAT at assembly hubs]]5 KB (773 words) - 21:15, 26 February 2019
- ...ge explains how to install, configure and maintain an assembly hub (with a track hub and BLAT) using GBiB on a laptop running Kubuntu 19.10 (Eoan Ermine). M ** General ---> Description: Ebola virus genome assembly and track hubs.23 KB (3,233 words) - 19:38, 25 June 2021
- ...ool will have a place to paste in input data instead of uploading a custom track, and it will also accept a list of rsIDs. ...osition specified. Custom tracks in VCF format that are loaded into track hubs are also supported as input.10 KB (1,562 words) - 07:51, 1 September 2018
- Please examine the [https://hgdownload.soe.ucsc.edu/hubs/ GenArk Assembly Hub] collection groups.txt – definitions for track groups on this assembly31 KB (4,804 words) - 23:20, 18 November 2022
- ...lains why Cloud-'''backup''' providers are not good for storing UCSC track hubs or bigBed/bigWig/bam custom tracks. I'm not 100% sure of everything below, ...at it impacts the performance of all of hgTracks, as currently the slowest track holds up the whole display. Also, potentially, we may get blocked by some o4 KB (808 words) - 17:24, 15 March 2019
- ...and Animal Genomes, San Diego - Introduction to the genome browser, GenArk hubs, creating an assembly hub and REST API interface [[Image:PAG30_2023-01-14.p ...Animal Genomes) XXVIII in San Diego, CA: ''Comparative Genomics, Assembly Hubs and New API Data Access on the UCSC Genome Browser''. [[:File:2020_PAG_UCSC29 KB (3,991 words) - 23:28, 30 April 2024
- for the nestedRepeats track: # Nested Repeats track.10 KB (1,434 words) - 08:09, 1 September 2018
- * Added bedDetail track type to allow composite trackDb configuration options. ...other than alnum, dash, and underbars to underbars in track names in track hubs.46 KB (6,816 words) - 17:37, 14 January 2016
- used in the ''assembly'' track and thus be available to reference from the genome browser view back A simple track to construct is the '''gc5Base''' track to show GC content15 KB (2,132 words) - 22:19, 24 September 2018
- track construction directories, for example: ==Track Hub files==34 KB (4,951 words) - 00:04, 24 March 2024
- * Track hubs can now designate their own track groups * Added back the link with hub info to track hub in blue bar118 KB (18,164 words) - 16:52, 1 May 2024
- ...test.cse.ucsc.edu/cgi-bin/hgGateway?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ WSB_EiJ] ...-test.cse.ucsc.edu/cgi-bin/hgTracks?hubUrl=http://genome-test.cse.ucsc.edu/hubs/mouseStrains/hub.txt&genome=WSB_EiJ&position=chr9:85913016-85915594 chr9:85274 KB (32,982 words) - 18:48, 7 February 2018
