XenTro9 11-way conservation alignment
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see also
- X. tropicalis 11-way XenTro9 11-way Genome size statistics
- X. tropicalis 11-way XenTro9 11-way conservation lastz parameters
- all other UCSC Multiple Alignments
do not edit
This table is automatically generated off-line from the UCSC databases. Please do not edit it.
| URL to assembly sequence |
UCSC db name/ genome-preview browser |
Scientific name/ assembly information |
Common name |
assembly date (version) | source version |
Repeat Masker |
Window Masker |
chain on xenTro9 |
% of xenTro9 matched (chainLink table) |
|---|---|---|---|---|---|---|---|---|---|
| 01 | xenTro9 | Xenopus tropicalis | X. tropicalis | Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9) | DOE Joint Genome Institute | 2017-03-27 | 2017-03-27 | N/A | N/A |
| 02 | xenLae2 | Xenopus laevis | African clawed frog | Aug. 2016 (Xenopus_laevis_v2/xenLae2) | International Xenopus Sequencing Consortium | 2017-03-29 | 2017-03-29 | 2017-04-06 | 54.877% |
| 03 | nanPar1 | Nanorana parkeri | Tibetan frog | Mar. 2015 (BGI_ZX_2015/nanPar1) | ASM93562v1 | 2015-03-19 | 2015-03-20 | 2017-03-30 | 8.180% |
| 04 | chrPic2 | Chrysemys picta bellii | Painted turtle | Mar. 2014 (v3.0.3/chrPic2) | International Painted Turtle Genome Sequencing Consortium | 2014-04-29 | 2014-04-10 | 2017-04-07 | 6.459% |
| 05 | monDom5 | Monodelphis domestica | Opossum | Oct. 2006 (Broad/monDom5) | Broad Institute monDom5 (NCBI project 12561, accession AAFR03000000) | 2009-08-14 | 2009-08-14 | 2017-04-07 | 5.414% |
| 06 | galGal5 | Gallus gallus | Chicken | Dec 2015 (Gallus_gallus-5.0/galGal5) | International Chicken Genome Consortium | 2016-04-14 | 2016-04-14 | 2017-04-07 | 3.387% |
| 07 | anoCar2 | Anolis carolinensis | Lizard | May 2010 (Broad AnoCar2.0/anoCar2) | Broad Institute of MIT and Harvard AnoCar 2.0 (GCA_000090745.1) | 2011-04-12 | 2011-04-13 | 2017-04-07 | 5.977% |
| 08 | canFam3 | Canis lupus familiaris | Dog | Sep. 2011 (Broad CanFam3.1/canFam3) | Broad CanFam3.1 (GCA_000002285.2) | 2012-01-05 | 2012-01-06 | 2017-04-06 | 3.311% |
| 09 | hg38 | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | GRCh38 Genome Reference Consortium Human Reference 38 (GCA_000001405.2) | 2014-01-10 | 2013-12-25 | 2017-03-30 | 7.950% |
| 10 | mm10 | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | Genome Reference Consortium Mouse Build 38 (GCA_000001635.2) | 2012-02-06 | 2012-02-07 | 2017-03-30 | 6.581% |
| 11 | fr3 | Takifugu rubripes | Fugu | Oct. 2011 (FUGU5/fr3) | Fugu Genome Sequencing Consortium - FUGU5 (NCBI project 1434, GCA_000180615.2) | 2011-11-16 | 2011-11-17 | 2017-04-07 | 3.777% |
