PonAbe2 Genome size statistics

statistics collected from UCSC 2bit files

The external links from the UCSC database name go to the sequencing center information pages for this genome
N bases == unknown bases in the assembly marked by "N"
non-N bases == called bases in the assembly
total size == all bases in assembly, N and non-N
The coverage numbers are taken directly from information README files from the sequencing center
The N50 size is calculated directly from the UCSC chrom.sizes file which is the size of the chromosomes as seen in the UCSC genome browser
% masked == masked either with WindowMasker or RepeatMasker plus TRF simple repeats
% of ponAbe2 matched (chainLink table) == featureBits ponAbe2 chain<Db>Link == alignment coverage

order count	ucsc db name	chrom count	total size	non-N bases	N base count	% masked	common name	coverage	N50 chrom.sizes	alignment type	% of ponAbe2 matched (chainLink table)	chain minScore	chain linearGap
01	ponAbe2	55	3,446,771,396	3,093,543,172	353,228,224	% 50.89	Orangutan	6X	135191526	N/A	N/A	1000	loose
02	hg18	49	3,107,677,273	2,881,421,696	226,255,577	% 48.85	Human	20X	146274826	SyntenicNet	91.302%	3000	medium
03	panTro2	52	3,350,447,512	2,909,246,738	441,200,774	% 48.90	Chimp	6X	145085868	SyntenicNet	89.431%	3000	medium
04	rheMac2	22	2,864,106,071	2,646,668,809	217,437,262	% 48.28	Rhesus	5.1X	153947521	SyntenicNet	82.623%	3000	medium
05	calJac1	49,724	3,029,401,840	2,929,124,957	100,276,883	% 47.50	Marmoset	6X	303154	RecipBest	74.694%	3000	medium
06	mm9	35	2,725,765,481	2,620,345,972	105,419,509	% 44.09	Mouse	20X	131738871	SyntenicNet	30.659%	3000	medium
07	monDom4	10	3,605,614,649	3,501,643,220	103,971,429	% 55.69	Opossum	6.5X	526135210	Net	13.137%	5000	loose
08	ornAna1	201,523	1,996,811,212	1,842,235,522	154,575,690	% 47.89	Platypus	6X	991605	Net	6.936%	5000	loose