User:Kate: Difference between revisions

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I've been a UCSC staff genome browser software developer since April 2003.  
I've been a genome browser software developer at UCSC since April 2003.  
Before that, I worked in the software industry for several decades,
Before that, I worked in the software industry for several decades,
working primarily in scientific and technological applications areas.
working primarily in scientific and technical applications areas.
It's great to be able to apply my Unix/C/programming expertise to
It's great to be able to apply my Unix/C/programming expertise to
my favorite application area -- Human Biology (which was actually my major
my favorite application area -- Human Biology (which was actually my major
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== Current Projects ==
== Current Projects ==
* Multiple alignment of 28 vertebrate species
* [http://genome.ucsc.edu/ENCODE ENCODE at UCSC] – I'm the UCSC staff point-person for the [http://www.genome.gov/10005107 ENCODE Project] [[Image:encodelogo.gif|right|px 50]]
* [http://genome.ucsc.edu/ENCODE ENCODE at UCSC] – I'm the UCSC staff point-person for the [http://www.genome.gov/10005107 ENCODE Project] [[Image:encodelogo.gif|right|px 50]]
 
* MAF custom track implementation
* Custom tracks management interface – allows users to add/remove/update/doc
* Browser work for NHGRI Tumor Sequencing Project
* ENCODE MSA tracks – 23-species aligned with 3 algorithms, nearly ready to release
* Comparative genomics track enhancements – alternate conservation scores, chain/net mega-tracks
* Comparative genomics track enhancements – alternate conservation scores, chain/net mega-tracks
* Composite track features – multiple configuration panels for mixed-types
* Composite track features – multiple configuration panels for mixed-types
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== Past Projects ==
== Past Projects ==
* Chimpanzee genome browsers [[Image:chimp.jpg|170 px|right]]
* Chimpanzee genome browsers [[Image:chimp.jpg|170 px|right]]
* Custom tracks management interface (hgCustom)
* Composite track implementation
* Composite track implementation
* Multiple alignments and conservation scoring
* Multiple alignments and conservation scoring

Latest revision as of 01:02, 23 February 2007

I've been a genome browser software developer at UCSC since April 2003. Before that, I worked in the software industry for several decades, working primarily in scientific and technical applications areas. It's great to be able to apply my Unix/C/programming expertise to my favorite application area -- Human Biology (which was actually my major in college). Unfortunately, we didn't have introns then... Kate Rosenbloom

Current Projects

  • Multiple alignment of 28 vertebrate species
  • ENCODE at UCSC – I'm the UCSC staff point-person for the ENCODE Project
    px 50
  • MAF custom track implementation
  • Browser work for NHGRI Tumor Sequencing Project
  • Comparative genomics track enhancements – alternate conservation scores, chain/net mega-tracks
  • Composite track features – multiple configuration panels for mixed-types

Past Projects

  • Chimpanzee genome browsers
    Chimp.jpg
  • Custom tracks management interface (hgCustom)
  • Composite track implementation
  • Multiple alignments and conservation scoring
  • ENCODE orthologous region sequences
  • Coordinate conversion web utility (hgLiftOver)
  • Conservation track display
  • Fugu genome browser