User contributions for Mspeir
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10 August 2023
- 22:1122:11, 10 August 2023 diff hist +3 Getting started with Cell Browser wrangling →Your .bash_profile current
- 22:1122:11, 10 August 2023 diff hist +3 Getting started with Cell Browser wrangling →Your .bash_profile
3 August 2023
- 20:5620:56, 3 August 2023 diff hist +85 Getting started with Cell Browser wrangling →Your .bash_profile: adding a few extra lines
20 July 2023
- 22:3522:35, 20 July 2023 diff hist −2 Getting started with Cell Browser wrangling →Your .bashrc: tweak to formatting
31 August 2022
- 17:5217:52, 31 August 2022 diff hist +132 Cell Browser Release Process →Step 4: Upgrade code on cells-beta
- 16:5316:53, 31 August 2022 diff hist +393 Cell Browser Release Process →Step 6: Post-release wrap-up: Adding a bit more detail to this section
26 August 2022
- 20:4420:44, 26 August 2022 diff hist +136 Cell Browser best practices →Finding a paper associated with a bioRxiv pub: adjusting formatting of section current
- 20:3920:39, 26 August 2022 diff hist +15 Cell Browser best practices →desc.conf: minor formatting tweaks
- 20:3820:38, 26 August 2022 diff hist +78 Cell Browser best practices →Putting things into cellbrowser-confs repo
- 20:3720:37, 26 August 2022 diff hist +373 Cell Browser best practices →Finding a paper associated with a bioRxiv pub: making steps a bit more clear.
- 20:1320:13, 26 August 2022 diff hist +218 Cell Browser best practices →Providing the Unit for datasets: even more seurat unit details.
- 20:1120:11, 26 August 2022 diff hist +262 Cell Browser best practices →Providing the Unit for datasets: adding a bit more detail about Seurat units
25 August 2022
- 21:4621:46, 25 August 2022 diff hist +370 Cell Browser scripts add something about tabInfo
- 21:3121:31, 25 August 2022 diff hist +601 Cell Browser scripts →columnCorrection
- 21:1321:13, 25 August 2022 diff hist +80 Cell Browser scripts →colorConverter
- 20:1720:17, 25 August 2022 diff hist +315 Cell Browser scripts Adding link to page with more details on getTagVals and addTags
- 20:1520:15, 25 August 2022 diff hist +491 Cell Browser scripts →getTagVals: adding some details
- 20:0820:08, 25 August 2022 diff hist +567 Cell Browser scripts →addTags: adding details
- 19:5519:55, 25 August 2022 diff hist +156 Cell Browser scripts →datasetDiffs: adding a bit more detail
- 19:5119:51, 25 August 2022 diff hist +181 Cell Browser scripts →updateNewsSec: adding a bit more detail
- 19:5019:50, 25 August 2022 diff hist +208 Cell Browser scripts →cbBuildMulti: adding more detail
- 18:0618:06, 25 August 2022 diff hist 0 Making a hub for a cell browser →Track description page: making a few things into section headers current
- 18:0518:05, 25 August 2022 diff hist +1,236 Cell Browser scripts Adding more details to a number of scripts
24 August 2022
- 23:4923:49, 24 August 2022 diff hist +1,420 Cell Browser scripts Adding some stubs of sections for other tools
12 August 2022
- 18:0218:02, 12 August 2022 diff hist +2 System Architecture Map minor formatting tweaks. current
9 August 2022
- 20:1920:19, 9 August 2022 diff hist +11 Wrangling process →Commit cellbrowser/desc.conf files
- 20:0620:06, 9 August 2022 diff hist +1 Getting started with Cell Browser wrangling →Setting up a .cellbrowser.conf
3 August 2022
- 18:2718:27, 3 August 2022 diff hist −323 Cell browser data flow and architecture Redirecting to page with desired name current
- 18:2618:26, 3 August 2022 diff hist +375 N Cell Browser data flow and architecture Created page with "How does data flow between different machines? Diagram here? How does building a cell browser work? What files are copied over? Which ones are transformed into anoth..."
- 18:2218:22, 3 August 2022 diff hist −52 Advanced Cell Browser Topics No edit summary current
- 18:2218:22, 3 August 2022 diff hist +52 Advanced Cell Browser Topics Redirected page to Generating coordinates using cbScanpy
2 August 2022
- 18:2418:24, 2 August 2022 diff hist +375 N Cell browser data flow and architecture stub of page
22 July 2022
- 22:4122:41, 22 July 2022 diff hist +347 Cell Browser testing Note about cmd line testing
- 22:3622:36, 22 July 2022 diff hist +101 Wrangling process →Run cbBuild
- 22:3522:35, 22 July 2022 diff hist +242 Wrangling process →Run cbBuild: adding note about visibility
- 22:3222:32, 22 July 2022 diff hist +4 Wrangling process →Commit cellbrowser/desc.conf files
- 22:0422:04, 22 July 2022 diff hist +29 Cell Browser filters No edit summary
- 22:0422:04, 22 July 2022 diff hist +2,999 N Finding archive datasets for the Cell Browser Adding page on where to find CB data in archives current
- 18:2418:24, 22 July 2022 diff hist +4 Editing the Cell Browser docs fixing image formatting current
20 July 2022
- 22:2522:25, 20 July 2022 diff hist +2,372 N Cell Browser filters Rough first draft of page
- 21:2821:28, 20 July 2022 diff hist +16 Managing cellbrowser.conf tag values for multiple datasets No edit summary current
- 21:2521:25, 20 July 2022 diff hist 0 N File:Cellbrowser filters.png No edit summary current
- 16:3616:36, 20 July 2022 diff hist +34 Cell Browser wrangling guided examples No edit summary current
- 16:3516:35, 20 July 2022 diff hist +89 N Category:Cell Browser Onboarding Created page with "Pages related to onboarding people for Cell Browser wrangling. Category:Cell Browser" current
- 16:3416:34, 20 July 2022 diff hist +37 Getting started with Cell Browser wrangling No edit summary
- 16:1916:19, 20 July 2022 diff hist +5,513 Managing cellbrowser.conf tag values for multiple datasets adding details about getTagsVals, adding cell browser category
18 July 2022
- 21:5321:53, 18 July 2022 diff hist +1 Cell Browser wrangling guided examples →Part 1: Directory setup and data export: fixing image formatting
- 18:0018:00, 18 July 2022 diff hist +4,135 N Managing cellbrowser.conf tag values for multiple datasets First draft of page, more to come
14 July 2022
- 22:5522:55, 14 July 2022 diff hist +33 Editing the Cell Browser docs Minor formatting tweaks
- 22:5322:53, 14 July 2022 diff hist +27 Editing the Cell Browser docs Adding cell browser category
- 22:4022:40, 14 July 2022 diff hist +48 Editing the Cell Browser docs →Editing sample configs
- 22:3822:38, 14 July 2022 diff hist +2,515 N Editing the Cell Browser docs Adding page on editing cell browser docs
- 22:3522:35, 14 July 2022 diff hist 0 N File:Cellbrowser docs newfile.png No edit summary current
- 22:3422:34, 14 July 2022 diff hist 0 N File:Cellbrowser docs commit.png No edit summary current
- 22:3222:32, 14 July 2022 diff hist 0 N File:Cellbrowser docs preview.png No edit summary current
- 22:3222:32, 14 July 2022 diff hist 0 N File:Cellbrowser docs edit.png No edit summary current
13 July 2022
- 22:0222:02, 13 July 2022 diff hist +1,250 Making a hub for a cell browser Adding example to -c/--colors section
- 21:2321:23, 13 July 2022 diff hist +638 Making a hub for a cell browser →Building a hub: minor adjustments based on feedback
12 July 2022
- 20:5520:55, 12 July 2022 diff hist +28 Making a hub for a cell browser →cellbrowser.conf settings: adding cell browser tag
- 16:5316:53, 12 July 2022 diff hist +288 Wrangling process →Twitter announcement: adding example
- 16:4716:47, 12 July 2022 diff hist +126 Wrangling process →Review dataset on cells
- 16:4216:42, 12 July 2022 diff hist +224 Wrangling process →Push data to cells: adding some details
- 16:3716:37, 12 July 2022 diff hist +103 Wrangling process →Update news section: fix up formatting of this section
11 July 2022
- 23:0923:09, 11 July 2022 diff hist +669 Wrangling process →Stage and review dataset on cells-beta: adding more detail to section
- 21:4021:40, 11 July 2022 diff hist +87 Wrangling process →Import data: minor tweaks to formatting
- 20:5920:59, 11 July 2022 diff hist +79 Making a hub for a cell browser →cellbrowser.conf settings: adding link to view dataset that includes a hub
8 July 2022
- 21:5421:54, 8 July 2022 diff hist +54 Making a hub for a cell browser →Using all these options together: adding image to this section
- 21:5121:51, 8 July 2022 diff hist 0 N File:Cellbrowser gb hub.png No edit summary current
- 21:4021:40, 8 July 2022 diff hist +75 Making a hub for a cell browser →cellbrowser.conf settings: adding images
- 21:3921:39, 8 July 2022 diff hist 0 N File:Cellbrowser marker gb link.png No edit summary current
- 21:3821:38, 8 July 2022 diff hist 0 N File:Cellbrowser gb link.png No edit summary current
7 July 2022
- 23:2123:21, 7 July 2022 diff hist +1,303 Making a hub for a cell browser Adding last sections on symlinks and cellbrowser.conf settings.
- 22:3622:36, 7 July 2022 diff hist +737 Making a hub for a cell browser Filling out section on building hub itself
- 18:5518:55, 7 July 2022 diff hist +2,445 Making a hub for a cell browser rearranging page a bit
6 July 2022
- 23:0023:00, 6 July 2022 diff hist +269 Getting started with Cell Browser wrangling →Mosh (optional)
- 22:5622:56, 6 July 2022 diff hist +1 Cell Browser wrangling guided examples →=What next?
- 22:5622:56, 6 July 2022 diff hist +257 Cell Browser wrangling guided examples Adding final seuart display image, other tweaks to sections
- 22:5322:53, 6 July 2022 diff hist 0 N File:CbImportSeurat final display.png No edit summary current
- 22:4822:48, 6 July 2022 diff hist −2 Cell Browser wrangling guided examples →Part 3: desc.conf and final polish
- 22:2722:27, 6 July 2022 diff hist +116 Cell Browser wrangling guided examples →Part 2: cellbrowser.conf and cbBuild: Adding image
- 22:2522:25, 6 July 2022 diff hist 0 N File:CbImportScanpy first export display.png No edit summary current
- 21:3021:30, 6 July 2022 diff hist +74 Cell Browser wrangling guided examples →Part 2: cellbrowser.conf and cbBuild
- 21:3021:30, 6 July 2022 diff hist 0 File:CbImportSeurat first export display.png Mspeir uploaded a new version of File:CbImportSeurat first export display.png current
- 21:2721:27, 6 July 2022 diff hist 0 N File:CbImportSeurat first export display.png No edit summary
- 21:0821:08, 6 July 2022 diff hist +65 Cell Browser wrangling guided examples →Part 3: desc.conf and final polish: adjusting image size
- 21:0521:05, 6 July 2022 diff hist +1,241 Cell Browser wrangling guided examples →Part 3: desc.conf and final polish: Adding some more details to this section
- 21:0421:04, 6 July 2022 diff hist 0 N File:CbImportScanpy final display v2.png No edit summary current
- 20:5620:56, 6 July 2022 diff hist +661 Cell Browser wrangling guided examples →Part 1: Directory setup and data export
- 18:1918:19, 6 July 2022 diff hist +28 Cell Browser wrangling guided examples →Part 1: Directory setup and data export: adding image of exported files
- 18:1818:18, 6 July 2022 diff hist +75 N File:CbImportSeurat export files.png files resulting from cbImportSeurat on Li_et_al_2020_UCSC_seurat_object.rds current
- 18:1718:17, 6 July 2022 diff hist +28 Cell Browser wrangling guided examples →Part 1: Directory setup and data export: adding image of exported files
- 18:1618:16, 6 July 2022 diff hist +52 N File:CbImportScanpy export files.png files resulting from cbImportScanpy on TS_Liver.h5ad current
5 July 2022
- 22:3722:37, 5 July 2022 diff hist +3,846 Cell Browser wrangling guided examples →Using cbImportSeurat: filling out parts 2+3
- 20:4220:42, 5 July 2022 diff hist +1,556 Cell Browser wrangling guided examples →Using cbImportSeurat: filling in part 1
1 July 2022
- 21:3521:35, 1 July 2022 diff hist +4,514 N Cell Browser wrangling guided examples Adding completed cbImportScanpy section, will come back to cbImportSeurat
- 15:4015:40, 1 July 2022 diff hist +101 Cell Browser Release Process →Step 2: Make a release ticket
30 June 2022
- 23:0823:08, 30 June 2022 diff hist +2,030 Cell Browser Release Process Adding section on QA
- 21:5321:53, 30 June 2022 diff hist +28 Cell Browser testing Adding cell browser category
- 20:4920:49, 30 June 2022 diff hist +3,539 N Cell Browser testing Adding page on cell browser ui testing, command-line testing section to come
- 20:2920:29, 30 June 2022 diff hist +1,071 N ScATAC-seq in the Cell Browser First try at a cell browser atac page current