BioengSymp2015Poster

This page expands on the UCSC Genome Browser poster presented by Matthew Speir at UC-wide Bioengineering Symposium 2015 at UCSC. The poster details two of the newest additions to the UCSC Genome Browser suite of tools, the Data Integrator and GBiB.

Poster

Use The UCSC Genome Browser To Visualize And Analyze Your Genomic Data

Poster files: PPTX PDF

Data Integrator

The Data Integrator is the newest tool available as part of the Genome Browser. It was released June 9, 2015. You can start using it yourself here: http://genome.ucsc.edu/cgi-bin/hgIntegrator. For more information on using the Data Integrator, see the User's Guide here: http://genome.ucsc.edu/goldenPath/help/hgIntegratorHelp.html.

Genome Browser in a Box

The Genome Browser in a Box (GBiB) is a complete mirror of the UCSC Genome Browser and its suite of tools that can be run on your computer. It is available from the Genome Browser store: https://genome-store.ucsc.edu/, and runs on Windows, Mac, and Linux. It allows you to view and analyze private data without the need to put it in a public-accessible place. You can learn more about downloading and setting up GBiB here: http://genome.ucsc.edu/goldenPath/help/gbib.html

How to get help

• Search for answers in our mail list archives: http://genome.ucsc.edu/contacts.html
• Email a new question to our actively monitored public archived list genome@soe.ucsc.edu
• Email a private question to our UCSC-only non-archived list genome-www@soe.ucsc.edu
• UCSC Genome Browser training (workshops, videos, tutorials): http://genome.ucsc.edu/training/
• UCSC Genome Browser YouTube channel: http://bit.ly/genomebrowserYoutube
• UCSC Genome Browser blog: http://genome.ucsc.edu/blog/
• OpenHelix's free training materials: http://www.openhelix.com/downloads/ucsc/

Other posters about the UCSC Genome Browser

• The Data Integrator: a new way to combine data sources underlying the UCSC Genome Browser. Hinrichs AS et al. Biology of Genomes, 2015. wiki PPTX PDF
• View your data with ease and privacy in the UCSC Genome Browser. Barber GP et al. Genome Informatics, 2014. PDF
• New variation resources at the UCSC Genome Browser. Rhead B et al. Biology of Genomes, 2013. wiki PPTX PDF
• Remote sequence assembly viewing on the UCSC Genome Browser. Clawson H et al. Biology of Genomes, 2013. wiki PDF PPTX
• Using the UCSC Genome Browser to evaluate putative genetic variants. Hinrichs AS et al. Biology of Genomes, 2012. wiki PPTX PDF
• Visually integrating genomic data in the UCSC Genome Browser. Hinrichs AS et al. HGV, 2011. wiki PPTX PDF
• UCSC Genome Browser Data Hubs. Zweig AS et al. Biology of Genomes, 2011. PDF
• Genome-wide ENCODE Data at UCSC. Rosenbloom KR et al. ASHG, 2010. PPT
• UCSC Genome Browser Tool Suite. Hinrichs AS et al. Genomics of Common Disease, 2008. PPT PDF
• More Presentations