User contributions for AngieHinrichs
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25 May 2022
- 23:0223:02, 25 May 2022 diff hist +262 Presentations →2022: Added SPHERES presentation on Pango lineages (brief intro & example)
12 April 2022
- 18:5418:54, 12 April 2022 diff hist +234 Presentations Added 2022 section with April presentation on pangolin v4 updates for public health (Theiagen)
19 November 2021
- 23:2423:24, 19 November 2021 diff hist +205 Presentations →2021: Adding PDF slides and video links for StaPH-B presentation on pangolin --usher
- 19:2519:25, 19 November 2021 diff hist +240 Presentations →2021: Added StaPH-B presentation on pangolin's --usher mode
14 October 2021
- 15:2315:23, 14 October 2021 diff hist +295 Presentations →2021: Added PH4GE Pipelines & Viz group meeting presentation on UShER
2 June 2021
- 00:3200:32, 2 June 2021 diff hist +245 Presentations →2021: Added Theiagen Office Hours presentation on pangolin v3.0
12 February 2021
- 23:2923:29, 12 February 2021 diff hist +4 m Presentations add some commas
- 23:2723:27, 12 February 2021 diff hist +205 Presentations →2021: Added 2021 section with Angie's demo for Russ's class
23 November 2020
- 20:2320:23, 23 November 2020 diff hist +170 Presentations →2020: Added presentation on SARS-CoV-2 / hgPhyloPlace
22 April 2019
- 21:5021:50, 22 April 2019 diff hist +187 Presentations →2019: Added slides for dbSNP 2.0 talk
30 October 2018
- 19:2319:23, 30 October 2018 diff hist +249 Presentations →2018: Added presentation on adding patch sequences
31 October 2017
- 18:3018:30, 31 October 2017 diff hist +258 Presentations →2017: Added Genome Informatics poster
- 18:2718:27, 31 October 2017 diff hist +151 N File:GenomeInformatics2017.pages Mac Pages (analogous to PPT) file for Genome Informatics 2017 poster on support for HGVS terms in the Genome Browser and Variant Annotation Integrator. current
- 18:2218:22, 31 October 2017 diff hist +138 N File:GenomeInformatics2017.pdf Poster (36"x42") presented at Genome Informatics 2017 about support for HGVS terms in the Genome Browser and Variant Annotation Integrator current
14 September 2017
- 16:5716:57, 14 September 2017 diff hist +412 Presentations →2017: Added internal HGVS presentation and GA4GH VATT presentation on shared HGVS test set
31 August 2016
- 16:2416:24, 31 August 2016 diff hist +893 Git pull: what happens when and why? Added section on git pull --rebase and some wiki formatting.
23 September 2015
- 18:5618:56, 23 September 2015 diff hist +6 Debugging cgi-scripts →Debugging with GDB: added 'run' step to gdb instructions
4 June 2015
- 19:0319:03, 4 June 2015 diff hist +2 BoG2015DataIntegratorPoster Updated one more link: demo6 --> preview current
1 May 2015
- 18:4518:45, 1 May 2015 diff hist +1 m BoG2015DataIntegratorPoster typo fix
- 18:4418:44, 1 May 2015 diff hist +123 m BoG2015DataIntegratorPoster →Other posters about the UCSC Genome Browser: Change File: to Media: for direct link; make formatting consistent
- 18:3518:35, 1 May 2015 diff hist +9 m BoG2015DataIntegratorPoster fix url formatting
- 18:3418:34, 1 May 2015 diff hist 0 m BoG2015DataIntegratorPoster →Poster: decapitalize
- 18:3418:34, 1 May 2015 diff hist +356 Presentations →2015: Adding BoG2015 poster on Data Integrator. Also changed File: to Media: to link to actual files instead of File: pages
- 18:2418:24, 1 May 2015 diff hist +51 BoG2015DataIntegratorPoster →Poster: Adding PDF & PPTX files
- 18:1918:19, 1 May 2015 diff hist +78 N File:BoG2015DataIntegrator.pptx poster on the Data Integrator presented at Biology of Genomes, CSHL, May 2015. current
- 18:1718:17, 1 May 2015 diff hist +75 N File:BoG2015DataIntegrator.pdf poster on the Data Integrator, presented at Biology of Genomes, CSHL, 2015. current
- 05:5605:56, 1 May 2015 diff hist +141 BoG2015DataIntegratorPoster →How to get help: Adding note that genome is public as suggested by Ann; adding genome-www private option
30 April 2015
- 16:4816:48, 30 April 2015 diff hist +300 BoG2015DataIntegratorPoster →How to get help: Added training URLs from b0b.
29 April 2015
- 23:1523:15, 29 April 2015 diff hist +51 m BoG2015DataIntegratorPoster →Data Integrator: mention session
- 23:1323:13, 29 April 2015 diff hist +324 BoG2015DataIntegratorPoster →Data Integrator: Add link to session on demo6; hopefully it will be on genome-preview by May 5th.
27 April 2015
- 23:1523:15, 27 April 2015 diff hist −30 m HGV2011 →Other links: fix broken link
- 23:0123:01, 27 April 2015 diff hist +6 m BoG2015DataIntegratorPoster →Poster: ...: don't include the verbose title in the section header.
- 22:5922:59, 27 April 2015 diff hist +1,411 m BoG2015DataIntegratorPoster Copying still more from Brooke's BoG2013VariationPoster and adding a reference to more recent posters
- 22:5122:51, 27 April 2015 diff hist +447 m BoG2015DataIntegratorPoster copying more of Brooke's structure
- 22:4422:44, 27 April 2015 diff hist +487 Nm BoG2015DataIntegratorPoster Skeleton of a page for Angie's poster on the Data Integrator at Biology of Genomes 2015
16 April 2015
- 19:1019:10, 16 April 2015 diff hist +3,356 Chains Nets Split into sections, wrote an intro and basic definitions. The Nets section needs more work, but at least this is an improvement.
11 March 2015
- 20:5320:53, 11 March 2015 diff hist +59 Presentations →2015: Adding files for 11 March 15 talk
- 20:5020:50, 11 March 2015 diff hist +78 N File:HgAi genecats 15 03 11.pdf slides for Angie's presentation on hgAi (Annotation Integrator) March 11, 2015 current
- 20:4720:47, 11 March 2015 diff hist +78 N File:HgAi genecats 15 03 11.pptx slides for Angie's presentation on hgAi (Annotation Integrator) March 15, 2015 current
- 20:4620:46, 11 March 2015 diff hist +84 m Presentations →2015: placeholder for talk (no files yet)
- 20:4420:44, 11 March 2015 diff hist +10 m Presentations Added 2015
6 March 2014
- 18:0818:08, 6 March 2014 diff hist +29 Demo sandbox →Claimed sandbox table: claimed demo6
- 17:5917:59, 6 March 2014 diff hist +470 Demo sandbox Updating info about which demo machines have their own htdocs-demo* directory (now all but demo3 and demo5).
17 January 2014
- 04:3204:32, 17 January 2014 diff hist +41 Demo sandbox →Claimed sandbox table: Tim asked for demo1 and I don't need it anymore.
30 April 2013
- 17:0517:05, 30 April 2013 diff hist +31 Demo sandbox →Claimed sandbox table: demo1
13 November 2012
- 21:0921:09, 13 November 2012 diff hist +246 Build Environment Variables →External library configuration (USE_*): Mark USE_BAM and USE_TABIX sections as obsoleted by USE_SAMTABIX.
- 21:0221:02, 13 November 2012 diff hist −6 Build Environment Variables →Coming soon: USE_SAMTABIX: v275 is here!
- 20:5820:58, 13 November 2012 diff hist +96 KNETFILE HOOKS →Coming Soon!: v275 is out! Make this more prominent.
18 October 2012
- 04:0504:05, 18 October 2012 diff hist +708 Build Environment Variables →USE_BAM (+KNETFILE_HOOKS): Added section about samtabix, which hopefully will soon obviate patching & separate samtools and tabix!
17 October 2012
- 23:2123:21, 17 October 2012 diff hist +388 KNETFILE HOOKS →Description: Adding note about samtabix, which will soon make this obsolete, yay!
10 October 2012
- 18:2418:24, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent samtools patch file
- 18:2318:23, 10 October 2012 diff hist 0 m KNETFILE HOOKS →Apply Patch: use most recent tabix version
- 18:2218:22, 10 October 2012 diff hist +44 KNETFILE HOOKS →Patch files for tabix: Added patch for tabix-0.2.6. MLQ #9102
- 18:2118:21, 10 October 2012 diff hist +225 N File:Knetfile hooks tabix-0.2.6.patch Modifies tabix library from [http://samtools.sourceforge.net/ samtools.sourceforge.net] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS. current
18 September 2012
- 18:2418:24, 18 September 2012 diff hist 0 KNETFILE HOOKS →Apply Patch: Gert Hulselmans pointed out that patch files begin with capital K (wiki forces uploaded file names to begin w/capital letter),
2 July 2012
- 22:1722:17, 2 July 2012 diff hist 0 m Presentations →2012: formatting fix
- 22:1522:15, 2 July 2012 diff hist +227 Presentations →2012: Added Biology of Genomes poster
7 May 2012
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pptx PPTX of Angie's Biology of Genomes 2012 poster current
- 16:0916:09, 7 May 2012 diff hist +46 N File:Hinrichs BoG2012 GBVariants.pdf PDF for Angie's Biology of Genomes 2012 poster current
- 15:5915:59, 7 May 2012 diff hist +3,026 N BoG2012VariationPoster Page with links to poster source, session links, 1kG data used, help pages etc. current
14 December 2011
- 16:5316:53, 14 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": Ugh, really uploading the updated file now. current
13 December 2011
- 23:5823:58, 13 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This now renames all instances of bgzf_ to ti_bgzf_ because some versions of samtools have more conflicts than others and the previous patch wasn't renaming enough bgzf_ func
7 December 2011
- 18:5518:55, 7 December 2011 diff hist 0 File:Knetfile hooks tabix-0.2.5.patch uploaded a new version of "File:Knetfile hooks tabix-0.2.5.patch": This was out of date; it was missing the change from bgzf_tell to ti_bgzf_tell.
8 November 2011
- 22:5322:53, 8 November 2011 diff hist +412 Demo sandbox Added a subsection about dealing with possible rsync errors when building CGIs.
- 19:2519:25, 8 November 2011 diff hist +9 m Demo sandbox →Your demo responsibility: "assembly" -> "trackDb_demo''N''"
- 19:2319:23, 8 November 2011 diff hist +69 Demo sandbox →Building your demo assemblies: USER=demoN on command line; restore USER with /usr/bin/whoami if necessary.
- 19:1619:16, 8 November 2011 diff hist +570 Demo sandbox →Building your demo CGIs: Instead of modifying your shell envi's USER variable, you can set USER on the make command line -- seems cleaner to me. Also, no need for IMAGEEK; /usr/bin/whoami.
- 18:5818:58, 8 November 2011 diff hist +72 Demo sandbox →Claimed sandbox table: demo3
25 October 2011
- 19:0019:00, 25 October 2011 diff hist +287 KNETFILE HOOKS →Description: Added link to github pull request.
17 October 2011
- 17:4517:45, 17 October 2011 diff hist −87 KNETFILE HOOKS Made the samtools version sections into subsections of a samtools version notes section.
- 17:3217:32, 17 October 2011 diff hist +78 KNETFILE HOOKS →Patch files for samtools: added files for 0.1.16, 0.1.17
- 17:3117:31, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.16.patch Patch for samtools-0.1.16 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 17:2817:28, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.17.patch Patch for samtools-0.1.17 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 17:2017:20, 17 October 2011 diff hist +39 KNETFILE HOOKS Added patch file for samtools 0.1.18. Didn't add new section, nothing new to say about this patch relative to prior patches.
- 17:1617:16, 17 October 2011 diff hist +75 N File:Knetfile hooks.0.1.18.patch Patch for samtools-0.1.18 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
7 September 2011
- 15:5615:56, 7 September 2011 diff hist +255 Presentations →2011: Added HGV2011 poster
- 15:5415:54, 7 September 2011 diff hist −1 HGV2011 →UCSC Genome Browser poster
- 15:5415:54, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser.pdf No edit summary current
- 15:4615:46, 7 September 2011 diff hist +49 m Presentations →2008
- 15:4415:44, 7 September 2011 diff hist +31 m HGV2011 →Other posters about the UCSC Genome Browser
- 15:4215:42, 7 September 2011 diff hist +246 HGV2011 →Other posters
- 15:1815:18, 7 September 2011 diff hist +7 m HGV2011 No edit summary
- 15:1715:17, 7 September 2011 diff hist +2 m HGV2011 →View poster screenshots in the Genome Browser
- 15:1615:16, 7 September 2011 diff hist +150 HGV2011 →View poster screenshots in the Genome Browser
- 15:1015:10, 7 September 2011 diff hist +113 HGV2011 →Other links
- 15:0815:08, 7 September 2011 diff hist 0 HGV2011 →View poster screenshots in the Genome Browser
- 06:3406:34, 7 September 2011 diff hist +1,490 HGV2011 Adding poster files, screenshot session links
- 06:0906:09, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser.pptx No edit summary current
- 06:0606:06, 7 September 2011 diff hist 0 N File:HGV2011 GenomeBrowser Abstract.docx No edit summary current
3 September 2011
- 07:2607:26, 3 September 2011 diff hist +17 m HGV2011 added conf. date
- 07:2407:24, 3 September 2011 diff hist +636 N HGV2011 very rough draft -- I intend to put this page's URL on my poster so there's something for people to click around, get poster source/pdf etc.
- 07:0607:06, 3 September 2011 diff hist +148 Presentations →2008: Added Genomics of Common Disease poster.
2 September 2011
- 22:5722:57, 2 September 2011 diff hist +53 N File:UCSC Genome Browser GCD 2008.pdf Poster presented at Genomics of Common Disease, 2008. current
- 22:5522:55, 2 September 2011 diff hist +53 N File:UCSC Genome Browser GCD 2008.ppt Poster presented at Genomics of Common Disease, 2008. current
24 August 2011
- 23:5123:51, 24 August 2011 diff hist +60 KNETFILE HOOKS Added section for tabix-0.2.5
- 23:5023:50, 24 August 2011 diff hist +44 KNETFILE HOOKS →Patch files for tabix
- 23:4923:49, 24 August 2011 diff hist +200 N File:Knetfile hooks tabix-0.2.5.patch Modifies tabix library from [http://samtools.sourceforge.net/] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS.
16 August 2011
- 16:2216:22, 16 August 2011 diff hist +1 m Genes in gtf or gff format typo fix
7 April 2011
- 21:5821:58, 7 April 2011 diff hist 0 File:VariationGenecats20110406.pdf uploaded a new version of "Image:VariationGenecats20110406.pdf" current
- 21:5821:58, 7 April 2011 diff hist 0 File:VariationGenecats20110406.pptx uploaded a new version of "Image:VariationGenecats20110406.pptx": Corrected definition of polymorphism, caught by David and Tom. current
6 April 2011
- 20:1720:17, 6 April 2011 diff hist +95 N File:VariationGenecats20110406.pdf PDF version of .pptx slides -- animations are squashed so one slide isn't very readable, sorry.
- 20:1620:16, 6 April 2011 diff hist +184 Presentations →2011: Added April 6 genecats on human variation track work
- 20:1020:10, 6 April 2011 diff hist +85 N File:VariationGenecats20110406.pptx Angie's recent fun with dbSNP, VCF and GVF, from a browser developer's point of view.
16 March 2011
- 16:3516:35, 16 March 2011 diff hist +202 N File:Knetfile hooks tabix-0.2.3.patch Modifies tabix library from [http://samtools.sourceforge.net/] to add a wrapper layer to its network code. That allows UCSC to hook up its own network code in place of tabix's. See KNETFILE_HOOKS. current
- 16:3216:32, 16 March 2011 diff hist +863 KNETFILE HOOKS Adding tabix KNETFILE_HOOKS patch.
- 16:0916:09, 16 March 2011 diff hist +2,129 Build Environment Variables →External library configuration (USE_*): Added section for USE_TABIX (+KNETFILE_HOOKS).
29 November 2010
- 19:0419:04, 29 November 2010 diff hist +570 KNETFILE HOOKS Added samtools-0.1.{9,10,11}
- 18:5918:59, 29 November 2010 diff hist +73 KNETFILE HOOKS →Apply Patch: Added -p1 which is necessary 0.1.9 and later, and updated suggested version to 0.1.11.
- 18:5818:58, 29 November 2010 diff hist +116 KNETFILE HOOKS →Patch files: Added files for 0.1.{9,10,11}
- 18:5718:57, 29 November 2010 diff hist +75 N File:Knetfile hooks.0.1.11.patch Patch for samtools-0.1.11 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 18:5618:56, 29 November 2010 diff hist +75 N File:Knetfile hooks.0.1.10.patch Patch for samtools-0.1.10 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
- 18:5518:55, 29 November 2010 diff hist +74 N File:Knetfile hooks.0.1.9.patch Patch for samtools-0.1.9 (samtools.sourceforge.net), see [KNETFILE_HOOKS]. current
12 May 2010
- 21:3621:36, 12 May 2010 diff hist +61 Build Environment Variables →USE_BAM (+KNETFILE_HOOKS): Added link to samtools extension (knetfile_hooks).
20 March 2010
- 06:1006:10, 20 March 2010 diff hist +130 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 06:0706:07, 20 March 2010 diff hist +38 N File:ABRF2010 UCSC NGS.pdf backup in case workshop internet fails current
- 06:0706:07, 20 March 2010 diff hist +38 N File:ABRF2010 UCSC NGS.ppt backup in case workshop internet fails current
- 05:1305:13, 20 March 2010 diff hist +446 ABRF2010 Tutorial →Steps
- 05:1005:10, 20 March 2010 diff hist +56 N File:ABRF2010 chr21 export baseQual.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 05:0705:07, 20 March 2010 diff hist +56 N File:ABRF2010 chr21 export grayQual.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 05:0405:04, 20 March 2010 diff hist +56 N File:ABRF2010 chr21 export 1MB.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 04:5904:59, 20 March 2010 diff hist +155 ABRF2010 Tutorial →Steps
- 04:5804:58, 20 March 2010 diff hist 0 File:ABRF2010 TFBS.png uploaded a new version of "Image:ABRF2010 TFBS.png": smaller still, sheesh current
- 04:5604:56, 20 March 2010 diff hist 0 File:ABRF2010 TFBS.png uploaded a new version of "Image:ABRF2010 TFBS.png": a bit narrower, to avoid fuzzy transform
- 04:5204:52, 20 March 2010 diff hist +56 N File:ABRF2010 TFBS.png checkpoint image for demo/tutorial at ABRF 2010 workshop
- 04:4904:49, 20 March 2010 diff hist +167 ABRF2010 Tutorial →Steps
- 04:4704:47, 20 March 2010 diff hist +56 N File:ABRF2010 redbinGt15.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 04:4304:43, 20 March 2010 diff hist +188 ABRF2010 Tutorial →Steps
- 04:3904:39, 20 March 2010 diff hist +56 N File:ABRF2010 redbin 1.png checkpoint image for demo/tutorial at ABRF 2010 workshop current
- 04:2304:23, 20 March 2010 diff hist 0 File:ABRF2010 ggData.png uploaded a new version of "Image:ABRF2010 ggData.png": smaller -- the original was getting transformed down to 800 pix wide, which still didn't fit very well in 1020-pix wide browser and looked fuzzy. current
- 00:0600:06, 20 March 2010 diff hist +148 ABRF2010 Tutorial →Steps: Added first image with catch-up link
19 March 2010
- 23:5423:54, 19 March 2010 diff hist +56 N File:ABRF2010 ggData.png checkpoint image for demo/tutorial at ABRF 2010 workshop
- 22:5522:55, 19 March 2010 diff hist +39 ABRF2010 Tutorial →Extra
- 22:3222:32, 19 March 2010 diff hist +11 ABRF2010 Tutorial →Steps
- 22:3022:30, 19 March 2010 diff hist +205 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser: credits to Charlie
- 22:1022:10, 19 March 2010 diff hist +280 ABRF2010 Tutorial →Where to learn more: added links
- 22:0522:05, 19 March 2010 diff hist +3,756 ABRF2010 Tutorial →Steps: Added details, session links and b0b's SNP regions.
- 18:3418:34, 19 March 2010 diff hist +881 ABRF2010 Tutorial →Steps
- 18:2318:23, 19 March 2010 diff hist +530 ABRF2010 Tutorial →Steps
- 18:0618:06, 19 March 2010 diff hist +50 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 18:0518:05, 19 March 2010 diff hist +619 ABRF2010 Tutorial →Steps: added session links
- 17:4517:45, 19 March 2010 diff hist +1 ABRF2010 Tutorial →Steps
- 17:4417:44, 19 March 2010 diff hist +300 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing
- 17:3617:36, 19 March 2010 diff hist 0 ABRF2010 Tutorial →Steps
- 17:3517:35, 19 March 2010 diff hist +1 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing
- 17:1717:17, 19 March 2010 diff hist +296 ABRF2010 Tutorial →Comparing with UCSC-hosted data
- 17:1417:14, 19 March 2010 diff hist +2 ABRF2010 Tutorial →Where to learn more
- 17:1317:13, 19 March 2010 diff hist +38 ABRF2010 Tutorial →Tutorial: Viewing sequencing data in the UCSC Genome Browser
- 17:1117:11, 19 March 2010 diff hist +1,001 ABRF2010 Tutorial →Viewing alignments in BAM format
- 16:5116:51, 19 March 2010 diff hist +42 ABRF2010 Tutorial →Viewing alignments in BAM format: <nowiki> for fyi-URL; bold for something they should copy-paste.
- 16:3116:31, 19 March 2010 diff hist −66 ABRF2010 Tutorial →Transforming .sgr into bedGraph for Genome Browser viewing: Make URL-to-paste bold + <nowiki>.
- 16:2716:27, 19 March 2010 diff hist +20 ABRF2010 Tutorial →Genome Graphs with .sgr data: Make URLs bold + <nowiki>
18 March 2010
- 16:5216:52, 18 March 2010 diff hist +112 ABRF2010 Tutorial No edit summary
- 05:5805:58, 18 March 2010 diff hist +1,563 ABRF2010 Tutorial filling in some blanks
- 05:0405:04, 18 March 2010 diff hist +4,254 N ABRF2010 Tutorial skeletal first draft.
26 February 2010
- 23:1223:12, 26 February 2010 diff hist +582 Build Environment Variables →USE_BAM: Added KNETFILE_HOOKS.
25 October 2009
- 03:4403:44, 25 October 2009 diff hist +463 UdcFuse added some impl considerations
20 October 2009
- 22:3322:33, 20 October 2009 diff hist +21 m UdcFuse fixed whitespace for readdir prototype
- 22:3122:31, 20 October 2009 diff hist +1,177 UdcFuse Updated method descriptions.
15 October 2009
- 20:5920:59, 15 October 2009 diff hist −207 UdcFuse unbailing - Mark found that kernel handles seek by passing offset to read function.
13 October 2009
- 00:2200:22, 13 October 2009 diff hist +161 UdcFuse FUSE doesn't do seek... bailing. :(
12 October 2009
- 22:2722:27, 12 October 2009 diff hist +2,475 UdcFuse basics of filesystem structure, FUSE methods
- 19:1319:13, 12 October 2009 diff hist +1,692 N UdcFuse intro
5 October 2009
- 20:4620:46, 5 October 2009 diff hist +720 Make your own virtual space Most hgwdev-$USERs have no need to change the central.* settings from the default in cgi-bin/hg.conf.
4 September 2009
- 23:1523:15, 4 September 2009 diff hist +4,431 N Build Environment Variables Initial purpose was simply to describe USE_*, but expanded to cover other shell env vars that common.mk looks at.
- 21:2721:27, 4 September 2009 diff hist +1 Generic Makefile Use L +=
15 September 2008
- 20:0320:03, 15 September 2008 diff hist +890 Migration to hive Added "Who's responsible?" section.
- 19:5019:50, 15 September 2008 diff hist +195 m Migration to hive →GPFS vs. NFS, or how to move directories: clarifications
- 19:4019:40, 15 September 2008 diff hist +5,086 N Migration to hive Draft guidelines for migrating our files from old NFS servers to the new /hive.
27 August 2008
- 23:5323:53, 27 August 2008 diff hist −107 Presentations →2008: Removed Erich's presentation -- concerns about contents.
- 21:1721:17, 27 August 2008 diff hist +610 Presentations Added a few of my presentations from the past few years.
- 20:5720:57, 27 August 2008 diff hist +169 N File:Browsers CSHL Chicken 2005 05.ppt Presentation about the UCSC Genome Browser and Table Browser, at the Chicken Genome meeting at CSHL in May 2005 (just before the Biology of Genomes mtg, not part of it). current
- 20:5420:54, 27 August 2008 diff hist +91 N File:Automation 2006 09 12 v2.ppt Sep. 21, 2006 Genecats presentation about the scripts that ended up in hg/utils/automation. current
- 20:5120:51, 27 August 2008 diff hist +111 N File:Bejerano Lab 2008 03 31.ppt Crash course on making use of the kent/src tree, presented to Gill Bejerano's group at Stanford March 31, 2008. current
- 20:3920:39, 27 August 2008 diff hist +107 Presentations →2008: Added Erigh's 8/27/08 presentation.
- 20:3820:38, 27 August 2008 diff hist +47 N File:Swarm.ppt Erich's presentation at the 8.27.2008 genecats. current
21 April 2008
- 19:4819:48, 21 April 2008 diff hist −120 PCR on cDNA Updated description of seqTable and extFileTable which are now optional (seqFile can be used instead). current
11 April 2008
- 22:5622:56, 11 April 2008 diff hist −82 m PCR on cDNA No edit summary
- 22:5422:54, 11 April 2008 diff hist +6,553 N PCR on cDNA After-the-fact/in-progress design doc.
9 February 2008
- 00:2200:22, 9 February 2008 diff hist +37 DbSNP Track Notes →Track tables and files: -- updated, having built the extras for human,
24 January 2008
- 05:3405:34, 24 January 2008 diff hist +3,675 DbSNP Track Notes Updated after putting snp128 in the pushQ; could still say a lot more.
12 December 2007
- 23:1923:19, 12 December 2007 diff hist +8 m Ensembl tutorial signup →Attending
30 November 2007
- 05:3505:35, 30 November 2007 diff hist +4,805 N DbSNP Track Notes First draft of notes on SNP track development.
14 November 2007
- 21:0721:07, 14 November 2007 diff hist +207 Whole genome alignment howto Added links to Blastz, Conservation_Track and the modEncode wiki page that AngieTest was a draft for.
- 20:5420:54, 14 November 2007 diff hist +34 m Chains Nets Added Category:Comparative Genomics
- 20:5320:53, 14 November 2007 diff hist +34 m Blastz Added Category:Comparative Genomics
- 20:5120:51, 14 November 2007 diff hist −72 Conservation Track Added links to Blastz and Chains_Nets; wiki-formatted. current
- 20:2820:28, 14 November 2007 diff hist +14 Implementation Notes Added Blastz.
- 20:2720:27, 14 November 2007 diff hist +75 m Blastz added Category:Technical FAQ and link to Implementation Notes.
- 20:1920:19, 14 November 2007 diff hist +391 Chains Nets Added references to the new Blastz page; updated some kent/src paths.
- 20:0720:07, 14 November 2007 diff hist +4,182 N Blastz Brief description w/references, UCSC history, and the 3 different meanings of "repeats" / "masking".
25 October 2007
- 17:4217:42, 25 October 2007 diff hist +2,640 N Coordinate Transforms Brief description of 1-based fully closed vs. 0-based half-open, example w/translating coords to opposite strand.
10 October 2007
- 19:1319:13, 10 October 2007 diff hist −16,639 AngieTest Gutted contents to avoid dangling category reference. current
10 September 2007
- 19:4619:46, 10 September 2007 diff hist +2,651 m AngieTest Polishing... formatting, shorthand to text.
6 September 2007
- 23:2523:25, 6 September 2007 diff hist +1,570 m AngieTest minor formatting tweaks / clarifications
- 23:0723:07, 6 September 2007 diff hist +13,127 N AngieTest first draft of GBrowse UCSC plugin howto.
30 August 2007
- 05:1505:15, 30 August 2007 diff hist +196 AutoSql Added details about autoSql type support from MarkD.
29 August 2007
- 23:0323:03, 29 August 2007 diff hist +4,907 AutoSql Added long-winded browser-qa missive
12 September 2006
- 05:5105:51, 12 September 2006 diff hist −16 Main Page →Current Hot Topics: Replaced High Throughput Genome Builds meeting notes with Automation doc page
25 August 2006
- 18:5618:56, 25 August 2006 diff hist +94 Automation →Automation Wish List
- 18:5518:55, 25 August 2006 diff hist +1,283 Automation →Existing Automation Scripts
- 18:4118:41, 25 August 2006 diff hist +981 Automation →Automation Scripting Infrastructure
- 18:2118:21, 25 August 2006 diff hist +3 Automation →Automation Wish List
22 August 2006
- 23:5523:55, 22 August 2006 diff hist +1,689 Automation Started fleshing out a bit, still lots more to add and need to make a page per lib module and script.
21 August 2006
- 23:3823:38, 21 August 2006 diff hist +10 m Automation added genscan to wishlist
- 23:2723:27, 21 August 2006 diff hist +2,007 N Automation Outline of documentation for genome db build automation.
- 23:1823:18, 21 August 2006 diff hist 0 m High Throughput Genome Builds oops, typo in date of genecats meeting current
- 22:4122:41, 21 August 2006 diff hist +170 N Category:Automation New Automation category for doc/how-to of genome db build scripts.
- 22:3822:38, 21 August 2006 diff hist +102 High Throughput Genome Builds Added note about the genecats meeting that these notes originated from; added to new Automation category.
27 April 2006
- 21:4121:41, 27 April 2006 diff hist +47 m Cookie Session No edit summary
- 21:4121:41, 27 April 2006 diff hist +1,002 N Cookie Session all too brief explanation of our hguid cookie, hgsid CGI var, and hgcentral tables
- 21:3921:39, 27 April 2006 diff hist +106 Implementation Notes added reference to Cookie_Session
- 20:3420:34, 27 April 2006 diff hist +1,665 CpG Islands No edit summary
21 April 2006
- 00:1800:18, 21 April 2006 diff hist +34 m Logged In From Genome Browser No edit summary current
- 00:1500:15, 21 April 2006 diff hist +158 N Logged In From Genome Browser No edit summary
20 April 2006
- 17:0417:04, 20 April 2006 diff hist −11 m User:AngieHinrichs No edit summary current
- 16:4916:49, 20 April 2006 diff hist +2,123 N User:AngieHinrichs No edit summary
- 16:0616:06, 20 April 2006 diff hist +267 Implementation Notes No edit summary
8 April 2006
- 01:0401:04, 8 April 2006 diff hist +5 Chains Nets No edit summary
- 01:0401:04, 8 April 2006 diff hist +9 Chains Nets No edit summary
- 00:5800:58, 8 April 2006 diff hist −1 TableDescriptions No edit summary
- 00:5800:58, 8 April 2006 diff hist +58 TableDescriptions No edit summary
- 00:5700:57, 8 April 2006 diff hist +2 AutoSql No edit summary
7 April 2006
- 23:5623:56, 7 April 2006 diff hist +343 CpG Islands No edit summary
- 23:5123:51, 7 April 2006 diff hist +204 Main Page No edit summary
- 23:4623:46, 7 April 2006 diff hist +340 Chains Nets No edit summary
- 23:4223:42, 7 April 2006 diff hist +2,856 N CpG Islands No edit summary
- 23:0823:08, 7 April 2006 diff hist 0 Chains Nets No edit summary
- 23:0723:07, 7 April 2006 diff hist +24 Chains Nets No edit summary
- 23:0523:05, 7 April 2006 diff hist 0 Chains Nets No edit summary
- 23:0423:04, 7 April 2006 diff hist −15 Chains Nets No edit summary
- 23:0223:02, 7 April 2006 diff hist +4 Chains Nets No edit summary
- 23:0023:00, 7 April 2006 diff hist +2,886 N Chains Nets No edit summary
- 22:4822:48, 7 April 2006 diff hist 0 TableDescriptions No edit summary
- 22:4822:48, 7 April 2006 diff hist 0 TableDescriptions No edit summary
- 22:4822:48, 7 April 2006 diff hist 0 TableDescriptions No edit summary
- 22:4722:47, 7 April 2006 diff hist +46 TableDescriptions No edit summary
- 22:4722:47, 7 April 2006 diff hist +2,040 N TableDescriptions No edit summary
- 22:2922:29, 7 April 2006 diff hist −1 AutoSql No edit summary
- 22:2822:28, 7 April 2006 diff hist +1 AutoSql No edit summary
- 22:2822:28, 7 April 2006 diff hist +7 AutoSql No edit summary
- 22:2622:26, 7 April 2006 diff hist +47 AutoSql No edit summary
- 22:2622:26, 7 April 2006 diff hist +1,288 N AutoSql No edit summary
- 22:1222:12, 7 April 2006 diff hist −10 Implementation Notes No edit summary
- 22:0522:05, 7 April 2006 diff hist +15 Implementation Notes No edit summary
- 22:0422:04, 7 April 2006 diff hist +37 Implementation Notes No edit summary
- 22:0022:00, 7 April 2006 diff hist +640 N Implementation Notes Implementation details that QAers often ask developers about