User contributions for Max

24 March 2010

• 10:3110:31, 24 March 2010 diff hist +36‎ N Inofficial FAQ ‎ New page: How do I... * Extract promoters
• 10:0310:03, 24 March 2010 diff hist +81‎ Learn about the Browser ‎ →‎Developing with the UCSC API
• 10:0210:02, 24 March 2010 diff hist −36‎ Debugging cgi-scripts ‎No edit summary
• 10:0210:02, 24 March 2010 diff hist +144‎ N Debugging cgi-scripts ‎ New page: * [https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-March/001677.html post by Angie] that describes how to debug the cgi-scripts with gdb
• 10:0010:00, 24 March 2010 diff hist +64‎ Learn about the Browser ‎No edit summary

22 March 2010

• 15:1915:19, 22 March 2010 diff hist +17‎ Learn about the Browser ‎ →‎Modify your own copy of the browser
• 15:1515:15, 22 March 2010 diff hist +110‎ Learn about the Browser ‎ →‎Modify your own copy of the browser
• 15:1315:13, 22 March 2010 diff hist −115‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)

18 March 2010

• 11:1811:18, 18 March 2010 diff hist +46‎ Whole genome alignment howto ‎ →‎Fileformats
• 11:1811:18, 18 March 2010 diff hist +137‎ Whole genome alignment howto ‎ →‎Fileformats

13 March 2010

• 01:0101:01, 13 March 2010 diff hist +8‎ Browser Installation ‎ →‎Get Executables
• 01:0101:01, 13 March 2010 diff hist +167‎ Browser Installation ‎ →‎Get Executables
• 00:4200:42, 13 March 2010 diff hist +40‎ Browser Installation ‎ →‎Setup hg.conf

11 March 2010

• 20:0720:07, 11 March 2010 diff hist +9‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 20:0420:04, 11 March 2010 diff hist +143‎ Browser Installation ‎ →‎If it doesn't work...
• 20:0320:03, 11 March 2010 diff hist −6‎ Browser Installation ‎ →‎Obtain the /gbdb data file area
• 20:0120:01, 11 March 2010 diff hist +80‎ Browser Installation ‎ →‎Outline
• 20:0020:00, 11 March 2010 diff hist +1‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 20:0020:00, 11 March 2010 diff hist −59‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 19:5719:57, 11 March 2010 diff hist +73‎ Browser Mirrors ‎No edit summary

10 March 2010

• 19:4319:43, 10 March 2010 diff hist +1,712‎ Blat-FAQ ‎No edit summary

8 March 2010

• 20:1720:17, 8 March 2010 diff hist +59‎ Browser Installation ‎ →‎Prerequisites
• 20:1620:16, 8 March 2010 diff hist +288‎ Browser Installation ‎ →‎Prerequisites: space requriements
• 20:1420:14, 8 March 2010 diff hist +62‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)
• 18:1918:19, 8 March 2010 diff hist −246‎ Blat-FAQ ‎ →‎Memory consumption
• 18:1818:18, 8 March 2010 diff hist −16‎ Blat-FAQ ‎No edit summary
• 18:1618:16, 8 March 2010 diff hist +1,308‎ Blat-FAQ ‎No edit summary
• 09:0809:08, 8 March 2010 diff hist +40‎ Learn about the Browser ‎ →‎Compile the UCSC source tree and analyze genomes yourself

5 March 2010

• 09:3409:34, 5 March 2010 diff hist +67‎ Browser Installation ‎ →‎Create a "trash" directory
• 09:3309:33, 5 March 2010 diff hist +137‎ Browser Installation ‎ →‎Create a "trash" directory
• 09:3109:31, 5 March 2010 diff hist 0‎ Browser Installation ‎ →‎Outline
• 09:3109:31, 5 March 2010 diff hist 0‎ Browser Installation ‎ →‎Outline
• 09:3109:31, 5 March 2010 diff hist +36‎ Browser Installation ‎ →‎Outline
• 09:3009:30, 5 March 2010 diff hist +444‎ Browser Installation ‎ →‎Create a "trash" directory
• 09:2909:29, 5 March 2010 diff hist −332‎ Browser Installation ‎ →‎Outline
• 09:2809:28, 5 March 2010 diff hist +208‎ Browser Installation ‎ →‎Outline
• 09:2509:25, 5 March 2010 diff hist +83‎ Browser Installation ‎ →‎Outline
• 09:2309:23, 5 March 2010 diff hist −251‎ Browser Installation ‎ →‎Installing a Browser Mirror: added direct links, removed some sentences
• 09:2009:20, 5 March 2010 diff hist −16‎ Browser Installation ‎ →‎Prerequisites
• 09:1909:19, 5 March 2010 diff hist −9‎ Browser Installation ‎ →‎Outline
• 09:1909:19, 5 March 2010 diff hist +31‎ Browser Installation ‎No edit summary
• 09:1809:18, 5 March 2010 diff hist +998‎ Browser Installation ‎No edit summary

4 March 2010

• 19:0719:07, 4 March 2010 diff hist +9‎ Browser Installation ‎ →‎Grant Mysql rights
• 19:0719:07, 4 March 2010 diff hist −5‎ Browser Installation ‎ →‎Get all the html files
• 19:0519:05, 4 March 2010 diff hist −12‎ Browser Installation ‎ →‎Installing a Browser Mirror
• 19:0419:04, 4 March 2010 diff hist −31‎ Browser Installation ‎ →‎Installing a Browser Mirror on Red Hat and its Derivatives
• 19:0419:04, 4 March 2010 diff hist −225‎ Browser Installation ‎ →‎Installing a Browser Mirror on Red Hat and its Derivatives
• 19:0419:04, 4 March 2010 diff hist −130‎ Browser Installation ‎ →‎Removed: Get the data for each individual genome assembly: removed this section
• 19:0319:03, 4 March 2010 diff hist +25‎ Browser Installation ‎ →‎Download database tables
• 19:0319:03, 4 March 2010 diff hist +17‎ Browser Installation ‎ →‎Set up database tables
• 19:0119:01, 4 March 2010 diff hist −1‎ Browser Installation ‎ →‎Obtain the /gbdb data file area==
• 19:0119:01, 4 March 2010 diff hist −1,109‎ Browser Installation ‎ →‎Create the hgFixed database: removed hgFixed section completely
• 19:0019:00, 4 March 2010 diff hist +94‎ Browser Installation ‎ →‎Setup hg.conf
• 18:5918:59, 4 March 2010 diff hist −122‎ Browser Installation ‎ →‎Setup hg.conf
• 18:5818:58, 4 March 2010 diff hist −348‎ Browser Installation ‎ →‎Installing a Browser Mirror on Red Hat and its Derivatives: updated on mysql 5, removed full install note, some updates
• 18:5118:51, 4 March 2010 diff hist −46‎ Browser Installation ‎ reformatting of headings
• 18:5018:50, 4 March 2010 diff hist 0‎ Browser Installation ‎No edit summary
• 18:5018:50, 4 March 2010 diff hist −5‎ Browser Installation ‎No edit summary
• 18:4918:49, 4 March 2010 diff hist +155‎ Browser Installation ‎ →‎6. Set up database tables:
• 18:4818:48, 4 March 2010 diff hist +451‎ Browser Installation ‎ →‎7. Set up the "hgcentral" tables
• 18:4718:47, 4 March 2010 diff hist −907‎ Browser Installation ‎ →‎10. Partial mirrors: Adapt hgcentral
• 18:4718:47, 4 March 2010 diff hist +58‎ Browser Installation ‎ →‎7. Set up the "hgcentral" tables
• 18:4418:44, 4 March 2010 diff hist +1,301‎ N Talk:Browser Installation ‎ New page: (TODO: verify this entire section!!! Is it even necessary!!) The individual assemblies are only required if the mysql tables are going to be build from scratch or if direct access to the ...
• 18:4418:44, 4 March 2010 diff hist −1,237‎ Browser Installation ‎ →‎4. Optional: Get the data for each individual genome assembly: removed this section
• 18:4218:42, 4 March 2010 diff hist +76‎ Browser Installation ‎ →‎2.Configure Apache server
• 18:4118:41, 4 March 2010 diff hist +791‎ Browser Installation ‎ →‎2.Configure Apache server: added example httpd.conf with virtual hosts
• 18:3618:36, 4 March 2010 diff hist −6‎ Browser Installation ‎ →‎10. Partial mirrors: Adapt hgcentral
• 18:3518:35, 4 March 2010 diff hist +913‎ Browser Installation ‎ →‎9. Create the hgFixed database: added partial mirror instructions
• 18:2818:28, 4 March 2010 diff hist +173‎ Browser Installation ‎ →‎5. Obtain the /gbdb data file area: -added partial note
• 18:2718:27, 4 March 2010 diff hist +39‎ Browser Installation ‎ →‎6. Set up database tables:
• 18:2518:25, 4 March 2010 diff hist +171‎ Browser Installation ‎ →‎6. Set up database tables:: added other dbs
• 18:2218:22, 4 March 2010 diff hist +1,620‎ N Example Mysql Grants ‎ New page: These are the commmands that we have to execute on our UCSC mirror to get all rights for the user genome/password genome for the assemblies we're mirroring: <pre> GRANT USAGE ON *.* TO 'ge...
• 18:2018:20, 4 March 2010 diff hist +139‎ Browser Installation ‎ →‎6. Set up database tables:: corrected typo and added hint on other databases
• 17:2017:20, 4 March 2010 diff hist +131‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)
• 17:1917:19, 4 March 2010 diff hist +326‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)
• 17:1417:14, 4 March 2010 diff hist +116‎ Hg.conf ‎No edit summary
• 17:1317:13, 4 March 2010 diff hist +49‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)

1 March 2010

• 23:1923:19, 1 March 2010 diff hist +45‎ Adding New Tracks to a browser installation ‎No edit summary
• 23:1623:16, 1 March 2010 diff hist +80‎ Learn about the Browser ‎ →‎Modify your own copy of the browser

25 February 2010

• 19:0519:05, 25 February 2010 diff hist −19‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)
• 18:3418:34, 25 February 2010 diff hist +73‎ Browser Mirrors ‎No edit summary
• 18:3318:33, 25 February 2010 diff hist +57‎ Minimal Browser Installation ‎No edit summary
• 18:3318:33, 25 February 2010 diff hist +40‎ Minimal Browser Installation ‎No edit summary
• 18:2318:23, 25 February 2010 diff hist +7‎ Minimal Browser Installation ‎No edit summary
• 18:0318:03, 25 February 2010 diff hist +150‎ Tuning-primer.sh ‎No edit summary
• 16:5816:58, 25 February 2010 diff hist −58‎ Learn about the Browser ‎ →‎Statistics, overviews

24 February 2010

• 19:3119:31, 24 February 2010 diff hist +285‎ CentOS notes ‎ →‎Alternate site roots
• 18:5918:59, 24 February 2010 diff hist +65‎ Browser Installation ‎ →‎6. Set up database tables:: added hg.conf example link
• 15:1215:12, 24 February 2010 diff hist +68‎ Source tree compilation on Debian/Ubuntu ‎No edit summary
• 15:0315:03, 24 February 2010 diff hist −68‎ Source tree compilation on Debian/Ubuntu ‎No edit summary
• 15:0315:03, 24 February 2010 diff hist +70‎ Source tree compilation on Debian/Ubuntu ‎No edit summary

22 February 2010

• 16:3616:36, 22 February 2010 diff hist 0‎ Learn about the Browser ‎ →‎Making Of: How the UCSC genome annotations are created
• 16:3516:35, 22 February 2010 diff hist +69‎ Learn about the Browser ‎ →‎Making Of: How the UCSC genome annotations are created

19 February 2010

• 20:1320:13, 19 February 2010 diff hist −36‎ Whole genome alignment howto ‎ →‎Before you start
• 20:1320:13, 19 February 2010 diff hist −16‎ Whole genome alignment howto ‎ →‎Before you start
• 20:1220:12, 19 February 2010 diff hist 0‎ Whole genome alignment howto ‎ →‎Before you start
• 20:1220:12, 19 February 2010 diff hist +52‎ Whole genome alignment howto ‎ →‎Before you start

2 February 2010

• 07:3107:31, 2 February 2010 diff hist +1,014‎ N Keep your tracks separate from the UCSC trackdb ‎ New page: by Mark Diekhans on mailing list: <pre> Hi Terry, I would highly suggest keeping your track meta-data in your own source tree rather than mix them in with the mirrored ucsc tree. These c... current
• 07:3007:30, 2 February 2010 diff hist +55‎ Learn about the Browser ‎ →‎Install a copy of the browser on your own machine (Unix or Mac)

22 January 2010

• 09:2609:26, 22 January 2010 diff hist +410‎ The Ensembl Browser ‎No edit summary