User contributions for Max
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12 August 2011
- 19:0019:00, 12 August 2011 diff hist +975 Starting in David's group No edit summary
- 01:2901:29, 12 August 2011 diff hist +263 Learn about the Browser →Making Of: How the UCSC genome annotations are created
10 August 2011
- 22:5222:52, 10 August 2011 diff hist +109 m Minimal Browser Installation →Minimal Browser Installation: changed order
- 22:5022:50, 10 August 2011 diff hist +136 Browser Installation →Prerequisites: software and diskspace
5 August 2011
3 August 2011
- 19:0019:00, 3 August 2011 diff hist +19 Immunogenomics No edit summary
- 18:5918:59, 3 August 2011 diff hist +24 Vbase2 No edit summary current
- 18:5918:59, 3 August 2011 diff hist +169 N Vbase2 Created page with "* URL [http://www.vbase2.org/] * automatically created by BLASTING against Genbank/EMBL * more data than IMGT * lower quality? No manual annotation * only IG-V sequences"
- 18:5818:58, 3 August 2011 diff hist +5 Immunogenomics No edit summary
- 18:5718:57, 3 August 2011 diff hist +172 Immunogenomics papers No edit summary
- 18:5418:54, 3 August 2011 diff hist +71 Companies No edit summary current
2 August 2011
- 23:2323:23, 2 August 2011 diff hist +485 Starting in David's group →Administrative
- 23:2023:20, 2 August 2011 diff hist +667 Starting in David's group →Administrative
26 July 2011
- 23:0223:02, 26 July 2011 diff hist −2 m Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
23 July 2011
- 00:2600:26, 23 July 2011 diff hist +106 Starting in David's group →Administrative
- 00:2500:25, 23 July 2011 diff hist +101 Starting in David's group →Administrative
- 00:2400:24, 23 July 2011 diff hist +193 Starting in David's group →If you are an alien
20 July 2011
- 20:3720:37, 20 July 2011 diff hist +94 Starting in David's group →Technical
- 20:2420:24, 20 July 2011 diff hist +56 Starting in David's group →Technical
15 July 2011
- 22:2122:21, 15 July 2011 diff hist +224 IMGT →Intro current
- 22:2022:20, 15 July 2011 diff hist +153 IMGT →IMGT Structure
- 22:1922:19, 15 July 2011 diff hist +3 IMGT →IMGT Structure
- 22:1922:19, 15 July 2011 diff hist +57 IMGT →IMGT Structure
- 22:1822:18, 15 July 2011 diff hist +39 IMGT →Intro
- 22:1722:17, 15 July 2011 diff hist +35 Companies No edit summary
- 22:1622:16, 15 July 2011 diff hist +158 B-Cells →B-cell genomes current
- 22:1522:15, 15 July 2011 diff hist +271 B-Cells →B-cell genomes
- 22:1322:13, 15 July 2011 diff hist +126 B-Cells →B-cell genomes
14 July 2011
- 22:0522:05, 14 July 2011 diff hist +23 Immunogenomics papers No edit summary
- 22:0522:05, 14 July 2011 diff hist +126 Immunogenomics papers No edit summary
- 22:0422:04, 14 July 2011 diff hist +118 Immunogenomics papers No edit summary
- 22:0022:00, 14 July 2011 diff hist +88 Immunogenomics papers No edit summary
- 21:5821:58, 14 July 2011 diff hist +139 Companies No edit summary
- 21:5621:56, 14 July 2011 diff hist +88 Immunogenomics papers No edit summary
- 21:4921:49, 14 July 2011 diff hist +139 Immunogenomics papers No edit summary
12 July 2011
- 17:3017:30, 12 July 2011 diff hist +201 IMGT No edit summary
- 17:2717:27, 12 July 2011 diff hist +89 IMGT No edit summary
- 17:2517:25, 12 July 2011 diff hist +145 IMGT No edit summary
- 17:1117:11, 12 July 2011 diff hist +207 IMGT No edit summary
- 02:4602:46, 12 July 2011 diff hist +510 IMGT No edit summary
- 02:4302:43, 12 July 2011 diff hist +141 B-Cells →B-cell genomes
- 02:4202:42, 12 July 2011 diff hist +93 B-Cells →B-cell genomes
- 02:4102:41, 12 July 2011 diff hist +73 N Software tools Created page with "* Immune-Align: IGH@ locus, http://www.emi.unsw.edu.au/~ihmmune/index.php" current
- 02:4002:40, 12 July 2011 diff hist +22 Immunogenomics No edit summary
- 02:3902:39, 12 July 2011 diff hist +114 N Immunogenomics papers Created page with "* [http://stm.sciencemag.org/content/1/12/12ra23 Boyd et al, Fire lab] ** sequenced IGH-locus with BIOMED2 primers"
- 02:3802:38, 12 July 2011 diff hist +29 Immunogenomics No edit summary
- 02:3502:35, 12 July 2011 diff hist +61 Companies No edit summary
- 02:3002:30, 12 July 2011 diff hist +44 N Companies Created page with "* [http://www.adaptivetcr.com/ Adaptive TCR]"
- 02:3002:30, 12 July 2011 diff hist +16 Immunogenomics No edit summary
- 02:1302:13, 12 July 2011 diff hist +196 IMGT No edit summary
- 02:1202:12, 12 July 2011 diff hist +826 IMGT No edit summary
- 01:5201:52, 12 July 2011 diff hist +350 IMGT No edit summary
- 01:4801:48, 12 July 2011 diff hist +606 N IMGT Created page with "* The main reference database for immune-loci * It consists of databases, tools and additional files (e.g. ontology, some notes, etc) ** LIGM-DB: Nucleotide sequences of all kind..."
- 01:0301:03, 12 July 2011 diff hist +27 Immunogenomics No edit summary
- 01:0301:03, 12 July 2011 diff hist +887 N High-throughput sequencing and immunology Created page with "** To amplify the VDJ fragment with PCR, primers are designed for each V and each J gene in the genome ** Blood is extracted and PCR is run on the mixed cells ** The resulting DN..." current
- 01:0301:03, 12 July 2011 diff hist +4 Immunogenomics No edit summary
- 01:0201:02, 12 July 2011 diff hist +44 Immunogenomics No edit summary
- 01:0201:02, 12 July 2011 diff hist +17 Immunogenomics No edit summary
- 01:0201:02, 12 July 2011 diff hist +6,061 N B-Cells Created page with " == B-Cells == left|thumb * B-Cells recognize non-body stuff, which is called [http://en.wikipedia.org/wiki/Antigen antigen]. They do this by either binding..."
- 01:0101:01, 12 July 2011 diff hist +8 Immunogenomics No edit summary
- 01:0101:01, 12 July 2011 diff hist +3,093 N Basic Immunology Introduction Created page with "== Intro == [[File:SEM blood cells.jpg|left|thumb|An electron microscope image of normal circulating human blood. In addition to the irregularly shaped white blood cells, both re..." current
- 01:0101:01, 12 July 2011 diff hist −9,991 Immunogenomics Move this to a different page
11 July 2011
- 22:3322:33, 11 July 2011 diff hist +122 Starting in David's group →Technical
30 June 2011
- 23:0423:04, 30 June 2011 diff hist 0 Starting in David's group →Technical
- 22:5822:58, 30 June 2011 diff hist +182 Starting in David's group →Administrative
- 22:5722:57, 30 June 2011 diff hist +530 Starting in David's group →Administrative
- 22:5622:56, 30 June 2011 diff hist −530 Starting in David's group →If you are an alien
- 22:5622:56, 30 June 2011 diff hist +262 Starting in David's group →If you are an alien
- 22:5422:54, 30 June 2011 diff hist +135 Starting in David's group →Technical
- 22:5322:53, 30 June 2011 diff hist +376 Starting in David's group →If you are an alien
28 June 2011
- 22:3522:35, 28 June 2011 diff hist +87 Immunogenomics →B-cell genomes
- 22:3422:34, 28 June 2011 diff hist +95 Immunogenomics →B-cell genomes
- 22:3322:33, 28 June 2011 diff hist +108 Immunogenomics →B-Cells
- 22:3022:30, 28 June 2011 diff hist +117 Immunogenomics →B-cell genomes
- 22:2922:29, 28 June 2011 diff hist 0 Immunogenomics →B-Cells
- 22:2822:28, 28 June 2011 diff hist −1 Immunogenomics →Intro
- 22:2722:27, 28 June 2011 diff hist +64 Immunogenomics →B-Cells
- 22:2522:25, 28 June 2011 diff hist +224 Immunogenomics →B-Cells
- 22:2322:23, 28 June 2011 diff hist −37 Immunogenomics →B-Cell receptors and antibodies
- 22:2322:23, 28 June 2011 diff hist +32 Immunogenomics →B-Cells
- 22:2122:21, 28 June 2011 diff hist +1 Immunogenomics →Intro
- 22:2122:21, 28 June 2011 diff hist +94 Immunogenomics →Intro
- 22:1922:19, 28 June 2011 diff hist −534 Immunogenomics →Intro
- 22:1822:18, 28 June 2011 diff hist +71 Immunogenomics →Intro
- 22:1722:17, 28 June 2011 diff hist +698 Immunogenomics →Intro
24 June 2011
- 21:4421:44, 24 June 2011 diff hist +244 Starting in David's group →Technical
- 21:4321:43, 24 June 2011 diff hist +11 Starting in David's group No edit summary
- 21:2721:27, 24 June 2011 diff hist +862 Starting in David's group No edit summary
- 21:1121:11, 24 June 2011 diff hist +398 Starting in David's group No edit summary
22 June 2011
- 23:3723:37, 22 June 2011 diff hist +105 Immunogenomics →Basic Immunology
- 23:2723:27, 22 June 2011 diff hist +829 Immunogenomics →Intro
- 23:2323:23, 22 June 2011 diff hist −5 Immunogenomics →B-cell genomes
- 23:2223:22, 22 June 2011 diff hist +378 Immunogenomics →B-Cell receptors and antibodies
- 23:2023:20, 22 June 2011 diff hist +16 Immunogenomics →B-Cell Proteins
- 23:1923:19, 22 June 2011 diff hist +60 Immunogenomics →B-Cells
- 23:1823:18, 22 June 2011 diff hist +1,819 Immunogenomics No edit summary
- 01:4201:42, 22 June 2011 diff hist −2 Immunogenomics →B-Cells
- 01:4101:41, 22 June 2011 diff hist −9 Immunogenomics →B-Cells
- 01:4101:41, 22 June 2011 diff hist +40 Immunogenomics →B-Cells (produced by the bone marrow in humans, but discovered in the bursa of birds)
- 00:0700:07, 22 June 2011 diff hist +92 Immunogenomics →B-cell genomes
- 00:0500:05, 22 June 2011 diff hist +71 Immunogenomics →B-Cells (produced by the bone marrow in humans, but discovered in the bursa of birds)
- 00:0400:04, 22 June 2011 diff hist +28 Immunogenomics →B-Cells (produced by the bone marrow in humans, but discovered in the bursa of birds)
- 00:0300:03, 22 June 2011 diff hist +19 Immunogenomics No edit summary
- 00:0200:02, 22 June 2011 diff hist +3,629 Immunogenomics No edit summary
21 June 2011
- 22:4322:43, 21 June 2011 diff hist +1,422 Immunogenomics No edit summary
- 22:1822:18, 21 June 2011 diff hist −1 m Immunogenomics No edit summary
- 22:1822:18, 21 June 2011 diff hist 0 Immunogenomics No edit summary
- 22:1822:18, 21 June 2011 diff hist +558 N Immunogenomics Created page with "* Quick intro: ** An [http://en.wikipedia.org/wiki/Antibody|Antibody] is composed of [http://en.wikipedia.org/wiki/Immunoglobulin_heavy_chain|Heavy] and [http://en.wikipedia.org..."
16 June 2011
- 23:1823:18, 16 June 2011 diff hist +249 Many Pythons No edit summary current
- 21:0821:08, 16 June 2011 diff hist +427 N Many Pythons Created page with "Little poll on how people are using Python here: * max: python 2.7 from /hive/groups/gencode/local/bin, no additional libraries * daniel: 2.6 from in ~dzerbino * glenn: not usin..."
14 June 2011
- 00:3500:35, 14 June 2011 diff hist +74 Starting in David's group No edit summary
10 June 2011
- 21:4821:48, 10 June 2011 diff hist +305 Starting in David's group No edit summary
9 June 2011
- 21:4721:47, 9 June 2011 diff hist +272 Starting in David's group poor man's bash completion
8 June 2011
- 22:2522:25, 8 June 2011 diff hist +94 Starting in David's group No edit summary
7 June 2011
- 20:4420:44, 7 June 2011 diff hist 0 Starting in David's group No edit summary
- 20:4320:43, 7 June 2011 diff hist +550 Starting in David's group No edit summary
- 06:4606:46, 7 June 2011 diff hist +232 Starting in David's group No edit summary
- 03:0703:07, 7 June 2011 diff hist −3 Cluster Jobs →Cluster Job Organization: fixed link -> genecats
4 June 2011
- 23:2223:22, 4 June 2011 diff hist +101 Starting in David's group No edit summary
- 01:1301:13, 4 June 2011 diff hist +61 m Starting in David's group No edit summary
2 June 2011
- 22:0122:01, 2 June 2011 diff hist +169 Starting in David's group No edit summary
- 21:5421:54, 2 June 2011 diff hist +265 Starting in David's group No edit summary
- 01:3101:31, 2 June 2011 diff hist +803 N Starting in David's group New page: * Administrative ** If you're a foreigner on J1 visa: you need ISSS to get your SEVIS entry OKed before you can apply for a social security number. After this, you have to wait until a day...
26 April 2011
- 20:1720:17, 26 April 2011 diff hist +1,351 N Internal steps of the browser when you load a page New page: * When you load a page, your webbroser will send the current URL and your local cookie to Apache * The Apache webserver will execute the hgTracks binary, sending it the parameters from the...
4 April 2011
- 14:5714:57, 4 April 2011 diff hist +36 Source tree compilation on Debian/Ubuntu No edit summary
- 14:5514:55, 4 April 2011 diff hist +75 Source tree compilation on Debian/Ubuntu No edit summary
15 March 2011
- 10:2810:28, 15 March 2011 diff hist +138 N File:LoadModencode.zip added submissions.csv and trackInfo.csv, the two tables are needed to get metaInformation about tracks. Rename to .zip before using this. current
- 10:2610:26, 15 March 2011 diff hist +142 N File:LoadModencode.txt script to load all chipseq data (~400 tracks) from modencode into a local UCSC installation automatically. Rename to .py before you use this. current
14 March 2011
- 10:5510:55, 14 March 2011 diff hist +31 User:Max No edit summary
- 10:5510:55, 14 March 2011 diff hist +38 User:Max No edit summary
10 March 2011
- 16:2416:24, 10 March 2011 diff hist 0 Browser Installation →Installing a Browser Mirror on Linux
- 16:2316:23, 10 March 2011 diff hist −1 Browser Installation →Installing a Browser Mirror on Linux
- 16:2316:23, 10 March 2011 diff hist −4 Browser Installation →Installing a Browser Mirror on Linux
- 16:2216:22, 10 March 2011 diff hist 0 Browser Installation →Installing a Browser Mirror on Linux
- 16:1616:16, 10 March 2011 diff hist +17 User talk:Hiram striked out deep sea oil well blow out as no one is worried about this anymore :-)
- 15:5815:58, 10 March 2011 diff hist +175 Learn about the Browser →Modify your own copy of the browser
- 15:5615:56, 10 March 2011 diff hist 0 Learn about the Browser →Modify your own copy of the browser
- 14:5514:55, 10 March 2011 diff hist +86 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 14:5414:54, 10 March 2011 diff hist +121 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 14:5314:53, 10 March 2011 diff hist +190 Learn about the Browser →Modify your own copy of the browser
- 14:5014:50, 10 March 2011 diff hist +5 Learn about the Browser →Modify your own copy of the browser
- 14:4914:49, 10 March 2011 diff hist 0 Learn about the Browser →Modify your own copy of the browser
- 10:5010:50, 10 March 2011 diff hist +129 Learn about the Browser →Use the browser website
24 February 2011
22 February 2011
- 14:5814:58, 22 February 2011 diff hist +34 Learn about the Browser →Modify your own copy of the browser
19 February 2011
- 16:5316:53, 19 February 2011 diff hist +353 Whole genome alignment howto →Outline - Notes: corrected wrong statements about multiz
17 February 2011
- 07:2907:29, 17 February 2011 diff hist +31 File:GenbankToTables.txt No edit summary current
- 07:2807:28, 17 February 2011 diff hist +155 N File:GenbankToTables.txt script to convert genbank files to table format. Can identify the submitters of the genbank records. Please remove the .txt extension before running this.
14 February 2011
- 22:4522:45, 14 February 2011 diff hist 0 Kent source utilities No edit summary
- 22:4522:45, 14 February 2011 diff hist +2 Kent source utilities No edit summary
- 22:4422:44, 14 February 2011 diff hist −2 Kent source utilities No edit summary
- 22:4422:44, 14 February 2011 diff hist −35 Kent source utilities No edit summary
- 22:1822:18, 14 February 2011 diff hist +116 Kent source utilities No edit summary
- 22:1722:17, 14 February 2011 diff hist +3 The source tree No edit summary
- 22:1722:17, 14 February 2011 diff hist +98 The source tree No edit summary
3 February 2011
- 01:1501:15, 3 February 2011 diff hist +131 Browser Installation →Installing a Browser Mirror on Linux
30 January 2011
- 00:2000:20, 30 January 2011 diff hist +123 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1900:19, 30 January 2011 diff hist −3 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1800:18, 30 January 2011 diff hist 0 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1700:17, 30 January 2011 diff hist +2 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1200:12, 30 January 2011 diff hist +79 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1100:11, 30 January 2011 diff hist −8 Source tree compilation on Debian/Ubuntu No edit summary
- 00:1000:10, 30 January 2011 diff hist +56 Source tree compilation on Debian/Ubuntu No edit summary
- 00:0800:08, 30 January 2011 diff hist −25 Source tree compilation on Debian/Ubuntu No edit summary
- 00:0700:07, 30 January 2011 diff hist +8 Source tree compilation on Debian/Ubuntu No edit summary
- 00:0700:07, 30 January 2011 diff hist +12 Source tree compilation on Debian/Ubuntu added libpng12
- 00:0200:02, 30 January 2011 diff hist +111 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
29 January 2011
- 23:5923:59, 29 January 2011 diff hist +127 Learn about the Browser →Use the browser website
- 23:5823:58, 29 January 2011 diff hist −97 Learn about the Browser →Use the browser website
- 23:5723:57, 29 January 2011 diff hist +295 Learn about the Browser →Use the browser website
- 23:5123:51, 29 January 2011 diff hist +128 Learn about the Browser →Developing with the UCSC API
- 23:1623:16, 29 January 2011 diff hist +90 Learn about the Browser No edit summary
28 January 2011
- 10:0710:07, 28 January 2011 diff hist +534 Hg.conf added .hg.conf instuatrioncs
23 January 2011
- 19:1919:19, 23 January 2011 diff hist +378 The Ensembl Browser →Genome data storage current
12 January 2011
- 11:2611:26, 12 January 2011 diff hist +173 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 11:2411:24, 12 January 2011 diff hist +16 LiftOver Howto No edit summary
- 11:2311:23, 12 January 2011 diff hist +35 LiftOver Howto No edit summary
- 11:2211:22, 12 January 2011 diff hist +2 LiftOver Howto No edit summary
6 January 2011
- 11:1911:19, 6 January 2011 diff hist +73 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
- 11:1811:18, 6 January 2011 diff hist +19 Learn about the Browser →Download the data of the genome browser (sequences and annotations)
- 11:1811:18, 6 January 2011 diff hist +24 Learn about the Browser No edit summary
5 January 2011
- 10:5510:55, 5 January 2011 diff hist +21 Minimal Browser Installation →See also
- 10:5310:53, 5 January 2011 diff hist +1 Minimal Browser Installation →See also
- 10:5310:53, 5 January 2011 diff hist +25 Minimal Browser Installation →See also: added link
4 January 2011
- 12:0312:03, 4 January 2011 diff hist −7 Other genome browsers →Other genome browsers
- 12:0312:03, 4 January 2011 diff hist +6 Other genome browsers →Other genome browsers
- 12:0312:03, 4 January 2011 diff hist −1 Other genome browsers No edit summary
10 December 2010
- 16:0816:08, 10 December 2010 diff hist +3 Wiggle BED to variableStep format conversion No edit summary
- 16:0816:08, 10 December 2010 diff hist +36 File:BedToWig.sh No edit summary current
- 16:0816:08, 10 December 2010 diff hist +112 N File:BedToWig.sh converts all bed files in current dir to wig counterparts. You must adapt the variable SPAN before running this.
- 16:0516:05, 10 December 2010 diff hist +112 Wiggle BED to variableStep format conversion No edit summary
24 November 2010
- 13:3913:39, 24 November 2010 diff hist 0 File:FixStepToBedGraph pl.txt uploaded a new version of "Image:FixStepToBedGraph pl.txt": added one comment current
- 13:3813:38, 24 November 2010 diff hist +17 File:FixStepToBedGraph pl.txt No edit summary
- 13:3613:36, 24 November 2010 diff hist 0 File:FixStepToBedGraph pl.txt uploaded a new version of "Image:FixStepToBedGraph pl.txt": Updated version: filters out track lines + can handle variableStep files
- 13:3513:35, 24 November 2010 diff hist +72 N File:FixStepToBedGraph pl v2.txt Updated version: filters out track lines + can handle variableStep files current
23 November 2010
22 November 2010
- 14:0714:07, 22 November 2010 diff hist +201 ABRF2010 Tutorial →Viewing alignments in BAM format: added note on samtools -t option
27 October 2010
- 10:1710:17, 27 October 2010 diff hist −45 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself: Updated macos link
14 October 2010
- 13:5013:50, 14 October 2010 diff hist +13 Gene id conversion No edit summary
- 13:4913:49, 14 October 2010 diff hist +129 Gene id conversion No edit summary
- 13:4913:49, 14 October 2010 diff hist +18 Gene id conversion No edit summary
- 13:4813:48, 14 October 2010 diff hist +120 Gene id conversion No edit summary
12 October 2010
- 15:2015:20, 12 October 2010 diff hist +3 CentOS notes →CentOS preparation
- 15:2015:20, 12 October 2010 diff hist +65 CentOS notes →CentOS preparation
- 13:3913:39, 12 October 2010 diff hist +417 Browser Installation →If it doesn't work...
- 13:3713:37, 12 October 2010 diff hist +99 Browser Installation →If it doesn't work...
- 13:3613:36, 12 October 2010 diff hist +114 Browser Installation →If it doesn't work...
- 13:3513:35, 12 October 2010 diff hist +171 Browser Installation →Grant Mysql rights: added direct link to readme file
- 13:3413:34, 12 October 2010 diff hist −171 Browser Installation →Download assembly database tables
- 13:3313:33, 12 October 2010 diff hist +4 Browser Installation →Download assembly database tables
- 13:3313:33, 12 October 2010 diff hist +71 Browser Installation →Download assembly database tables
- 13:3213:32, 12 October 2010 diff hist −4 Browser Installation →Download assembly database tables
- 13:3113:31, 12 October 2010 diff hist +96 The source tree No edit summary
- 13:3013:30, 12 October 2010 diff hist +61 Browser Installation →Get Executables
- 13:2813:28, 12 October 2010 diff hist +145 Browser Installation →Configure Apache server
- 10:3910:39, 12 October 2010 diff hist +216 Updating a Genome Browser Mirror No edit summary
11 October 2010
- 17:2217:22, 11 October 2010 diff hist +661 N Updating a Genome Browser Mirror New page: To update your local Genome Browser Installation: * As root, cd to your cgi-bin directory and update the cgi-bin files: cd /var/www/cgi-bin rsync -avzP rsync://hgdownload.cse.ucsc.edu...
- 17:1917:19, 11 October 2010 diff hist +1,306 Browser Installation →Configure Apache server
- 17:1917:19, 11 October 2010 diff hist −1,304 Browser Installation →Get Executables
15 September 2010
- 10:3810:38, 15 September 2010 diff hist +55 Ensembl minimum install No edit summary current
- 10:3410:34, 15 September 2010 diff hist +28 The Ensembl Browser →Documentation
- 10:3310:33, 15 September 2010 diff hist +14 The Ensembl Browser →Databases
- 10:3310:33, 15 September 2010 diff hist −105 The Ensembl Browser No edit summary
- 10:2410:24, 15 September 2010 diff hist +513 The Ensembl Browser No edit summary
14 September 2010
- 15:5915:59, 14 September 2010 diff hist +66 File:EnsemblWorkshopFiles.tar.gz No edit summary current
- 15:5915:59, 14 September 2010 diff hist 0 Ensembl data load →Set up sequences current
- 15:1215:12, 14 September 2010 diff hist −7 Ensembl data load →Set up sequences
- 15:0715:07, 14 September 2010 diff hist −5 Ensembl data load →Set up sequences
- 14:3914:39, 14 September 2010 diff hist 0 Ensembl data load →Run pipeline
- 14:3914:39, 14 September 2010 diff hist 0 Ensembl data load →Load Repeatmasker file
- 12:3912:39, 14 September 2010 diff hist −17 Ensembl data load →Run pipeline
- 12:2012:20, 14 September 2010 diff hist −4 Ensembl data load →Load Repeatmasker file
- 12:1312:13, 14 September 2010 diff hist +205 Ensembl data load No edit summary
- 12:1112:11, 14 September 2010 diff hist −89 Ensembl data load →Run pipeline
- 10:4910:49, 14 September 2010 diff hist +1,235 Ensembl data load No edit summary
- 10:4410:44, 14 September 2010 diff hist 0 File:EnsemblWorkshopFiles.tar.gz uploaded a new version of "Image:EnsemblWorkshopFiles.tar.gz": A copy of the necessary files for the Ensembl examples, from a 2010 EBI workshop organized by Bert Overduin. Extract into your home directory. Will extract into a workshop/ subdirectory an
- 10:3610:36, 14 September 2010 diff hist +274 Ensembl data load No edit summary
- 09:0609:06, 14 September 2010 diff hist −52 Ensembl data load No edit summary
- 09:0209:02, 14 September 2010 diff hist +121 Ensembl data load No edit summary
- 09:0109:01, 14 September 2010 diff hist +76 Ensembl data load →Load Repeatmasker file
- 08:5908:59, 14 September 2010 diff hist +1,176 Ensembl data load →Load Repeatmasker file
13 September 2010
- 15:5115:51, 13 September 2010 diff hist −1 Ensembl data load →Load Repeatmasker file
- 15:5015:50, 13 September 2010 diff hist +394 Ensembl data load →Load Repeatmasker file
- 15:4815:48, 13 September 2010 diff hist +355 Ensembl data load →Load Repeatmasker file
- 15:1915:19, 13 September 2010 diff hist +679 Ensembl data load No edit summary
- 15:1415:14, 13 September 2010 diff hist +140 Ensembl data load →Load Repeatmasker file
- 15:1315:13, 13 September 2010 diff hist −12 Ensembl data load →Load Repeatmasker file
- 15:1215:12, 13 September 2010 diff hist +169 Ensembl data load No edit summary
- 15:0715:07, 13 September 2010 diff hist +15 Ensembl data load No edit summary
- 15:0215:02, 13 September 2010 diff hist +323 N Ensembl data load New page: == Load Repeatmasker file == * Create a config file <code> [RepeatMask] db=repbase db_version=0129 db_file=repbase program=RepeatMask program_version=3.1.8 program_file=/path/to/repmasker...
- 14:0614:06, 13 September 2010 diff hist +88 Ensembl minimum install No edit summary
- 14:0414:04, 13 September 2010 diff hist +527 Ensembl minimum install No edit summary
- 13:5013:50, 13 September 2010 diff hist −55 Ensembl minimum install →Load coordinate systems into tables seq_region and coord_system
- 13:4713:47, 13 September 2010 diff hist +9 Ensembl minimum install →Load coordinate systems into tables seq_region and coord_system
- 13:4613:46, 13 September 2010 diff hist +95 Ensembl minimum install →Check the sequences in the database
- 13:4513:45, 13 September 2010 diff hist −1,336 Ensembl minimum install →Load assembly information into MySQL tables assembly and meta
- 13:4513:45, 13 September 2010 diff hist +16 Ensembl minimum install →Load coordinate systems into tables seq_region and coord_system
- 13:4413:44, 13 September 2010 diff hist +1,092 Ensembl minimum install No edit summary
- 13:2613:26, 13 September 2010 diff hist +1,339 Ensembl minimum install No edit summary
- 13:0913:09, 13 September 2010 diff hist +3,291 Ensembl minimum install →Load sequences into MySQL tables
- 13:0013:00, 13 September 2010 diff hist +1,182 Ensembl minimum install No edit summary
- 12:5812:58, 13 September 2010 diff hist +146 Ensembl minimum install No edit summary
- 12:5712:57, 13 September 2010 diff hist −11 Ensembl minimum install No edit summary
- 12:5712:57, 13 September 2010 diff hist +48 Ensembl minimum install No edit summary
- 12:5512:55, 13 September 2010 diff hist +15 Ensembl minimum install No edit summary
- 12:5412:54, 13 September 2010 diff hist +76 Ensembl minimum install No edit summary
- 12:5312:53, 13 September 2010 diff hist +108 N File:EnsemblWorkshopFiles.tar.gz A copy of the necessary files for the Ensembl examples, from a 2010 EBI workshop organized by Bert Overduin.
- 12:5012:50, 13 September 2010 diff hist +1,229 Ensembl minimum install No edit summary
- 12:3412:34, 13 September 2010 diff hist +762 N Ensembl minimum install New page: You need the fasta and AGP files for an assembly. Ensembl supports multiple coordinate systems: Any piece of DNA can be referenced by it's chromosomal location (1:1000), its super_contig l...
- 12:3212:32, 13 September 2010 diff hist +30 The Ensembl Browser No edit summary
- 12:3212:32, 13 September 2010 diff hist +201 The Ensembl Browser No edit summary
- 12:1112:11, 13 September 2010 diff hist +32 The Ensembl Browser No edit summary
- 12:1012:10, 13 September 2010 diff hist +89 The Ensembl Browser No edit summary
- 11:0411:04, 13 September 2010 diff hist +216 The Ensembl Browser No edit summary
- 11:0011:00, 13 September 2010 diff hist +372 The Ensembl Browser No edit summary
- 10:3910:39, 13 September 2010 diff hist +455 The Ensembl Browser No edit summary
27 August 2010
- 14:5914:59, 27 August 2010 diff hist +6 Browser Installation →If it doesn't work...
- 14:5814:58, 27 August 2010 diff hist +229 Browser Installation →If it doesn't work...
5 August 2010
- 16:5216:52, 5 August 2010 diff hist +97 Blat-FAQ No edit summary current
2 August 2010
- 22:4922:49, 2 August 2010 diff hist +503 Blat-FAQ →mental model (Jan 2009)
30 July 2010
- 14:5014:50, 30 July 2010 diff hist +113 Browser Installation →If it doesn't work...
- 14:3214:32, 30 July 2010 diff hist +304 Browser Installation →If it doesn't work...
2 July 2010
- 13:2313:23, 2 July 2010 diff hist 0 Browser Installation →If it doesn't work...
- 13:2313:23, 2 July 2010 diff hist +290 Browser Installation →If it doesn't work...
1 July 2010
- 10:0210:02, 1 July 2010 diff hist +9 LiftOver Howto →Alignment
- 10:0110:01, 1 July 2010 diff hist +320 LiftOver Howto No edit summary
- 09:5909:59, 1 July 2010 diff hist +106 LiftOver Howto →Alignment
- 09:5709:57, 1 July 2010 diff hist +83 LiftOver Howto No edit summary
- 09:5609:56, 1 July 2010 diff hist +29 LiftOver Howto No edit summary
- 09:5609:56, 1 July 2010 diff hist +236 LiftOver Howto →Alignment
30 June 2010
- 15:5115:51, 30 June 2010 diff hist +29 Minimal Steps For LiftOver No edit summary
- 15:5015:50, 30 June 2010 diff hist +1,015 LiftOver Howto No edit summary
- 14:2314:23, 30 June 2010 diff hist 0 Minimal Steps For LiftOver No edit summary
- 14:2214:22, 30 June 2010 diff hist +68 Minimal Steps For LiftOver added link to doc file
29 June 2010
- 19:1319:13, 29 June 2010 diff hist +33 Browser Installation →Prerequisites: software and diskspace
- 10:4710:47, 29 June 2010 diff hist −5 LiftOver Howto No edit summary
- 10:4710:47, 29 June 2010 diff hist +16 LiftOver Howto No edit summary
- 10:4710:47, 29 June 2010 diff hist +554 N LiftOver Howto New page: Creating a liftOver file is very similar to a whole-genome alignment. Please see the page Whole_genome_alignment_howto for some background on tools and terminology. == Outline == * BL...
25 June 2010
- 09:5209:52, 25 June 2010 diff hist +1 Finding nearby genes No edit summary
7 June 2010
- 10:4410:44, 7 June 2010 diff hist +257 Nm GenomeAnnotation:mm9-10024 New page: Category:Genome Annotation [http://genome.cse.ucsc.edu/cgi-bin/hgTracks?db=mm9&wikiTrack=pack&position=chr1:1000-1001 mm9 chr1:1,000-1,001] <B>'mm9-10024'</B> ''c... current
- 08:3608:36, 7 June 2010 diff hist +96 The Ensembl Browser No edit summary
- 08:3508:35, 7 June 2010 diff hist −48 The Ensembl Browser No edit summary
29 May 2010
- 00:1000:10, 29 May 2010 diff hist +157 Publications track Todo No edit summary current
28 May 2010
- 23:5523:55, 28 May 2010 diff hist −1 Publications track Todo No edit summary
- 23:5423:54, 28 May 2010 diff hist +220 Publications track Todo No edit summary
- 23:4723:47, 28 May 2010 diff hist +204 Publications track Todo No edit summary
- 00:0700:07, 28 May 2010 diff hist +26 Publications track Todo No edit summary
25 May 2010
- 04:4604:46, 25 May 2010 diff hist +185 Browser Installation →If it doesn't work...
- 04:4504:45, 25 May 2010 diff hist +8 Browser Installation →If it doesn't work...
- 04:4504:45, 25 May 2010 diff hist +30 Browser Installation →If it doesn't work...
21 May 2010
- 20:5020:50, 21 May 2010 diff hist +6 CVS kent source tree control undo my last change, did some totallly useless edit
- 20:3320:33, 21 May 2010 diff hist −6 CVS kent source tree control No edit summary
20 May 2010
- 20:5120:51, 20 May 2010 diff hist +78 N Publications track Todo New page: Table prep code: * Do not highlight section names * translate unicode to &#...
17 May 2010
- 22:5422:54, 17 May 2010 diff hist +34 Source tree compilation on Debian/Ubuntu No edit summary
- 22:3522:35, 17 May 2010 diff hist +95 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
4 May 2010
- 19:5319:53, 4 May 2010 diff hist +43 Ets binding sites No edit summary current
- 19:5119:51, 4 May 2010 diff hist +523 N Ets binding sites New page: * FGF activates the Ets-protein by dephosphorylation * Ets then binds and activates heart-specific genes * Ets binding sites: ** GGAA (Elf3 on uniprobe http://the_brain.bwh.harvard.edu/un...
21 April 2010
- 06:4806:48, 21 April 2010 diff hist +120 Browser Installation →If it doesn't work...
- 06:4706:47, 21 April 2010 diff hist +8 Browser Installation →Download other database tables
- 06:4606:46, 21 April 2010 diff hist +191 Browser Installation →Download other database tables
20 April 2010
- 09:0409:04, 20 April 2010 diff hist −7 Blat-FAQ →Galt's Mental model 1
- 09:0409:04, 20 April 2010 diff hist +1,070 Blat-FAQ →Galt's mental model (Jan 2009)
15 April 2010
- 13:0413:04, 15 April 2010 diff hist +1 Browser Installation →Create a "trash" directory
- 13:0113:01, 15 April 2010 diff hist −103 Browser Installation →Obtain the /gbdb data file area
- 13:0013:00, 15 April 2010 diff hist +160 Browser Installation →Configure Apache server
- 12:5712:57, 15 April 2010 diff hist +39 Browser Installation →Outline
13 April 2010
- 12:5612:56, 13 April 2010 diff hist +73 Debian packages No edit summary current
- 12:1812:18, 13 April 2010 diff hist +103 N Debian packages New page: * Policy page for Debian http://www.debian.org/doc/debian-policy/ch-customized-programs.html#s-web-appl
9 April 2010
- 19:4619:46, 9 April 2010 diff hist +104 Browser Installation →Download database tables
- 19:4419:44, 9 April 2010 diff hist +815 Browser Installation →Download database tables
- 19:4019:40, 9 April 2010 diff hist +4 Browser Installation →Installing a Browser Mirror on Linux
- 19:3919:39, 9 April 2010 diff hist +135 Browser Installation No edit summary
8 April 2010
- 11:3511:35, 8 April 2010 diff hist +109 Learn about the Browser →Use the browser website
- 11:2711:27, 8 April 2010 diff hist +33 Browser Installation →If it doesn't work...
- 11:2611:26, 8 April 2010 diff hist +210 Browser Installation →If it doesn't work...
- 11:2311:23, 8 April 2010 diff hist −5 Browser Installation →If it doesn't work...
- 11:2311:23, 8 April 2010 diff hist +243 Browser Installation →If it doesn't work...
7 April 2010
- 16:0016:00, 7 April 2010 diff hist +65 Browser Installation →If it doesn't work...
- 15:5915:59, 7 April 2010 diff hist +8 Browser Installation →If it doesn't work...
- 15:5815:58, 7 April 2010 diff hist +159 Browser Installation →If it doesn't work...
- 15:5515:55, 7 April 2010 diff hist +556 Browser Installation →If it doesn't work...
- 15:5015:50, 7 April 2010 diff hist +129 Browser Installation →If it doesn't work...
- 15:4815:48, 7 April 2010 diff hist +124 Browser Installation →If it doesn't work...
- 15:4315:43, 7 April 2010 diff hist +24 Browser Installation →Prerequisites
- 15:4215:42, 7 April 2010 diff hist +93 Browser Installation →Prerequisites
- 11:0111:01, 7 April 2010 diff hist +67 Browser Installation →If it doesn't work...
- 10:0710:07, 7 April 2010 diff hist +12 The source tree No edit summary
- 09:5309:53, 7 April 2010 diff hist −266 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
1 April 2010
- 16:1316:13, 1 April 2010 diff hist −10 Browser Installation →Download database tables
- 10:5310:53, 1 April 2010 diff hist +119 Browser Installation →Outline
31 March 2010
- 17:2917:29, 31 March 2010 diff hist +1,263 N Xref in Ensembl New page: * Xrefs can be linked from the transcript or from the peptide * To list all external identifiers for a given gene in the external DB called XXXX ** via gene -> transcript -> object_xref ->... current
- 17:2417:24, 31 March 2010 diff hist +2 The Ensembl Browser No edit summary
- 17:2317:23, 31 March 2010 diff hist +73 The Ensembl Browser No edit summary
25 March 2010
- 17:5117:51, 25 March 2010 diff hist +129 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
24 March 2010
- 10:4810:48, 24 March 2010 diff hist +28 N Frequently asked questions Redirecting to Inofficial FAQ current
- 10:4710:47, 24 March 2010 diff hist −4 Gene id conversion →With the UCSC Browser
- 10:4610:46, 24 March 2010 diff hist +17 Gene id conversion →With the UCSC Browser
- 10:4510:45, 24 March 2010 diff hist +9 Gene id conversion →With the UCSC Browser
- 10:4310:43, 24 March 2010 diff hist −4 Gene id conversion →With the UCSC Browser
- 10:4310:43, 24 March 2010 diff hist −5 Gene id conversion →With the UCSC Browser
- 10:4110:41, 24 March 2010 diff hist +25 Gene id conversion No edit summary
- 10:4110:41, 24 March 2010 diff hist +2,834 Gene id conversion No edit summary
- 10:3910:39, 24 March 2010 diff hist +42 Inofficial FAQ No edit summary current
- 10:3110:31, 24 March 2010 diff hist +1,270 N Extract promoters New page: To extract estimated promoter regions for the whole genome, select a track to base the analysis on (UCSC Genes, RefSeq Genes, etc.), then use the Table browser. Select output=sequence, seq... current
- 10:3110:31, 24 March 2010 diff hist +36 N Inofficial FAQ New page: How do I... * Extract promoters
- 10:0310:03, 24 March 2010 diff hist +81 Learn about the Browser →Developing with the UCSC API
- 10:0210:02, 24 March 2010 diff hist −36 Debugging cgi-scripts No edit summary
- 10:0210:02, 24 March 2010 diff hist +144 N Debugging cgi-scripts New page: * [https://lists.soe.ucsc.edu/pipermail/genome-mirror/2010-March/001677.html post by Angie] that describes how to debug the cgi-scripts with gdb
- 10:0010:00, 24 March 2010 diff hist +64 Learn about the Browser No edit summary
22 March 2010
- 15:1915:19, 22 March 2010 diff hist +17 Learn about the Browser →Modify your own copy of the browser
- 15:1515:15, 22 March 2010 diff hist +110 Learn about the Browser →Modify your own copy of the browser
- 15:1315:13, 22 March 2010 diff hist −115 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
18 March 2010
- 11:1811:18, 18 March 2010 diff hist +46 Whole genome alignment howto →Fileformats
- 11:1811:18, 18 March 2010 diff hist +137 Whole genome alignment howto →Fileformats
13 March 2010
- 01:0101:01, 13 March 2010 diff hist +8 Browser Installation →Get Executables
- 01:0101:01, 13 March 2010 diff hist +167 Browser Installation →Get Executables
- 00:4200:42, 13 March 2010 diff hist +40 Browser Installation →Setup hg.conf
11 March 2010
- 20:0720:07, 11 March 2010 diff hist +9 Browser Installation →Installing a Browser Mirror
- 20:0420:04, 11 March 2010 diff hist +143 Browser Installation →If it doesn't work...
- 20:0320:03, 11 March 2010 diff hist −6 Browser Installation →Obtain the /gbdb data file area
- 20:0120:01, 11 March 2010 diff hist +80 Browser Installation →Outline
- 20:0020:00, 11 March 2010 diff hist +1 Browser Installation →Installing a Browser Mirror
- 20:0020:00, 11 March 2010 diff hist −59 Browser Installation →Installing a Browser Mirror
- 19:5719:57, 11 March 2010 diff hist +73 Browser Mirrors No edit summary
10 March 2010
- 19:4319:43, 10 March 2010 diff hist +1,712 Blat-FAQ No edit summary
8 March 2010
- 20:1720:17, 8 March 2010 diff hist +59 Browser Installation →Prerequisites
- 20:1620:16, 8 March 2010 diff hist +288 Browser Installation →Prerequisites: space requriements
- 20:1420:14, 8 March 2010 diff hist +62 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 18:1918:19, 8 March 2010 diff hist −246 Blat-FAQ →Memory consumption
- 18:1818:18, 8 March 2010 diff hist −16 Blat-FAQ No edit summary
- 18:1618:16, 8 March 2010 diff hist +1,308 Blat-FAQ No edit summary
- 09:0809:08, 8 March 2010 diff hist +40 Learn about the Browser →Compile the UCSC source tree and analyze genomes yourself
5 March 2010
- 09:3409:34, 5 March 2010 diff hist +67 Browser Installation →Create a "trash" directory
- 09:3309:33, 5 March 2010 diff hist +137 Browser Installation →Create a "trash" directory
- 09:3109:31, 5 March 2010 diff hist 0 Browser Installation →Outline
- 09:3109:31, 5 March 2010 diff hist 0 Browser Installation →Outline
- 09:3109:31, 5 March 2010 diff hist +36 Browser Installation →Outline
- 09:3009:30, 5 March 2010 diff hist +444 Browser Installation →Create a "trash" directory
- 09:2909:29, 5 March 2010 diff hist −332 Browser Installation →Outline
- 09:2809:28, 5 March 2010 diff hist +208 Browser Installation →Outline
- 09:2509:25, 5 March 2010 diff hist +83 Browser Installation →Outline
- 09:2309:23, 5 March 2010 diff hist −251 Browser Installation →Installing a Browser Mirror: added direct links, removed some sentences
- 09:2009:20, 5 March 2010 diff hist −16 Browser Installation →Prerequisites
- 09:1909:19, 5 March 2010 diff hist −9 Browser Installation →Outline
- 09:1909:19, 5 March 2010 diff hist +31 Browser Installation No edit summary
- 09:1809:18, 5 March 2010 diff hist +998 Browser Installation No edit summary
4 March 2010
- 19:0719:07, 4 March 2010 diff hist +9 Browser Installation →Grant Mysql rights
- 19:0719:07, 4 March 2010 diff hist −5 Browser Installation →Get all the html files
- 19:0519:05, 4 March 2010 diff hist −12 Browser Installation →Installing a Browser Mirror
- 19:0419:04, 4 March 2010 diff hist −31 Browser Installation →Installing a Browser Mirror on Red Hat and its Derivatives
- 19:0419:04, 4 March 2010 diff hist −225 Browser Installation →Installing a Browser Mirror on Red Hat and its Derivatives
- 19:0419:04, 4 March 2010 diff hist −130 Browser Installation →Removed: Get the data for each individual genome assembly: removed this section
- 19:0319:03, 4 March 2010 diff hist +25 Browser Installation →Download database tables
- 19:0319:03, 4 March 2010 diff hist +17 Browser Installation →Set up database tables
- 19:0119:01, 4 March 2010 diff hist −1 Browser Installation →Obtain the /gbdb data file area==
- 19:0119:01, 4 March 2010 diff hist −1,109 Browser Installation →Create the hgFixed database: removed hgFixed section completely
- 19:0019:00, 4 March 2010 diff hist +94 Browser Installation →Setup hg.conf
- 18:5918:59, 4 March 2010 diff hist −122 Browser Installation →Setup hg.conf
- 18:5818:58, 4 March 2010 diff hist −348 Browser Installation →Installing a Browser Mirror on Red Hat and its Derivatives: updated on mysql 5, removed full install note, some updates
- 18:5118:51, 4 March 2010 diff hist −46 Browser Installation reformatting of headings
- 18:5018:50, 4 March 2010 diff hist 0 Browser Installation No edit summary
- 18:5018:50, 4 March 2010 diff hist −5 Browser Installation No edit summary
- 18:4918:49, 4 March 2010 diff hist +155 Browser Installation →6. Set up database tables:
- 18:4818:48, 4 March 2010 diff hist +451 Browser Installation →7. Set up the "hgcentral" tables
- 18:4718:47, 4 March 2010 diff hist −907 Browser Installation →10. Partial mirrors: Adapt hgcentral
- 18:4718:47, 4 March 2010 diff hist +58 Browser Installation →7. Set up the "hgcentral" tables
- 18:4418:44, 4 March 2010 diff hist +1,301 N Talk:Browser Installation New page: (TODO: verify this entire section!!! Is it even necessary!!) The individual assemblies are only required if the mysql tables are going to be build from scratch or if direct access to the ...
- 18:4418:44, 4 March 2010 diff hist −1,237 Browser Installation →4. Optional: Get the data for each individual genome assembly: removed this section
- 18:4218:42, 4 March 2010 diff hist +76 Browser Installation →2.Configure Apache server
- 18:4118:41, 4 March 2010 diff hist +791 Browser Installation →2.Configure Apache server: added example httpd.conf with virtual hosts
- 18:3618:36, 4 March 2010 diff hist −6 Browser Installation →10. Partial mirrors: Adapt hgcentral
- 18:3518:35, 4 March 2010 diff hist +913 Browser Installation →9. Create the hgFixed database: added partial mirror instructions
- 18:2818:28, 4 March 2010 diff hist +173 Browser Installation →5. Obtain the /gbdb data file area: -added partial note
- 18:2718:27, 4 March 2010 diff hist +39 Browser Installation →6. Set up database tables:
- 18:2518:25, 4 March 2010 diff hist +171 Browser Installation →6. Set up database tables:: added other dbs
- 18:2218:22, 4 March 2010 diff hist +1,620 N Example Mysql Grants New page: These are the commmands that we have to execute on our UCSC mirror to get all rights for the user genome/password genome for the assemblies we're mirroring: <pre> GRANT USAGE ON *.* TO 'ge...
- 18:2018:20, 4 March 2010 diff hist +139 Browser Installation →6. Set up database tables:: corrected typo and added hint on other databases
- 17:2017:20, 4 March 2010 diff hist +131 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 17:1917:19, 4 March 2010 diff hist +326 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 17:1417:14, 4 March 2010 diff hist +116 Hg.conf No edit summary
- 17:1317:13, 4 March 2010 diff hist +49 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
1 March 2010
- 23:1923:19, 1 March 2010 diff hist +45 Adding New Tracks to a browser installation No edit summary
- 23:1623:16, 1 March 2010 diff hist +80 Learn about the Browser →Modify your own copy of the browser
25 February 2010
- 19:0519:05, 25 February 2010 diff hist −19 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 18:3418:34, 25 February 2010 diff hist +73 Browser Mirrors No edit summary
- 18:3318:33, 25 February 2010 diff hist +57 Minimal Browser Installation No edit summary
- 18:3318:33, 25 February 2010 diff hist +40 Minimal Browser Installation No edit summary
- 18:2318:23, 25 February 2010 diff hist +7 Minimal Browser Installation No edit summary
- 18:0318:03, 25 February 2010 diff hist +150 Tuning-primer.sh No edit summary
- 16:5816:58, 25 February 2010 diff hist −58 Learn about the Browser →Statistics, overviews
24 February 2010
- 19:3119:31, 24 February 2010 diff hist +285 CentOS notes →Alternate site roots
- 18:5918:59, 24 February 2010 diff hist +65 Browser Installation →6. Set up database tables:: added hg.conf example link
- 15:1215:12, 24 February 2010 diff hist +68 Source tree compilation on Debian/Ubuntu No edit summary
- 15:0315:03, 24 February 2010 diff hist −68 Source tree compilation on Debian/Ubuntu No edit summary
- 15:0315:03, 24 February 2010 diff hist +70 Source tree compilation on Debian/Ubuntu No edit summary
22 February 2010
- 16:3616:36, 22 February 2010 diff hist 0 Learn about the Browser →Making Of: How the UCSC genome annotations are created
- 16:3516:35, 22 February 2010 diff hist +69 Learn about the Browser →Making Of: How the UCSC genome annotations are created
19 February 2010
- 20:1320:13, 19 February 2010 diff hist −36 Whole genome alignment howto →Before you start
- 20:1320:13, 19 February 2010 diff hist −16 Whole genome alignment howto →Before you start
- 20:1220:12, 19 February 2010 diff hist 0 Whole genome alignment howto →Before you start
- 20:1220:12, 19 February 2010 diff hist +52 Whole genome alignment howto →Before you start
2 February 2010
- 07:3107:31, 2 February 2010 diff hist +1,014 N Keep your tracks separate from the UCSC trackdb New page: by Mark Diekhans on mailing list: <pre> Hi Terry, I would highly suggest keeping your track meta-data in your own source tree rather than mix them in with the mirrored ucsc tree. These c... current
- 07:3007:30, 2 February 2010 diff hist +55 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
22 January 2010
- 09:2609:26, 22 January 2010 diff hist +410 The Ensembl Browser No edit summary
- 09:2309:23, 22 January 2010 diff hist +271 The Ensembl Browser No edit summary
- 09:2109:21, 22 January 2010 diff hist +132 Whole genome alignment howto →Remarks
- 09:1909:19, 22 January 2010 diff hist −47 Whole genome alignment howto →Example, step 3: Netting
- 09:1709:17, 22 January 2010 diff hist +1 Whole genome alignment howto →Outline - Notes
- 09:1609:16, 22 January 2010 diff hist +12 Whole genome alignment howto →Outline
- 09:1509:15, 22 January 2010 diff hist +201 Whole genome alignment howto →Fileformats we have to know
20 January 2010
- 10:5810:58, 20 January 2010 diff hist +26 Learn about the Browser →Analyze UCSC genome data files on your own machine
- 10:5710:57, 20 January 2010 diff hist +48 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac, Windows optional)
- 10:5510:55, 20 January 2010 diff hist +153 Learn about the Browser →Analyze UCSC genome data files on your own machine
- 10:5410:54, 20 January 2010 diff hist −176 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac, Windows optional)
- 10:5110:51, 20 January 2010 diff hist +21 Learn about the Browser →Analyze UCSC genome data files on your own machine
18 January 2010
- 13:2213:22, 18 January 2010 diff hist +90 Download All Genomes No edit summary
- 13:2113:21, 18 January 2010 diff hist +93 Download All Genomes No edit summary
- 13:2013:20, 18 January 2010 diff hist +113 N Talk:Download All Genomes New page: Thanks Hiram, your solution is obivously much better. Shoul have though about this before starting to code... :-( current
- 10:3210:32, 18 January 2010 diff hist −12 Learn about the Browser →UCSC source tools to analyze genomics data on your own machine
- 10:3210:32, 18 January 2010 diff hist −3 Learn about the Browser →Access the data of the genome browser and process them on your machine
- 10:3010:30, 18 January 2010 diff hist +126 Learn about the Browser No edit summary
17 January 2010
- 12:5312:53, 17 January 2010 diff hist +104 Learn about the Browser →Making Of: How the UCSC genome annotations are created
- 12:5212:52, 17 January 2010 diff hist +251 Learn about the Browser →Compile the source tree to get your own genomics pipeline started
- 12:5012:50, 17 January 2010 diff hist +24 Learn about the Browser →Compile the source tree to get your own genomics pipeline started
- 12:4912:49, 17 January 2010 diff hist +11 Source tree compilation on Debian/Ubuntu No edit summary
16 January 2010
- 21:2521:25, 16 January 2010 diff hist +68 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 21:2521:25, 16 January 2010 diff hist +137 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac, Windows optional)
14 January 2010
- 18:3718:37, 14 January 2010 diff hist +58 Learn about the Browser No edit summary
7 January 2010
- 18:3418:34, 7 January 2010 diff hist +2 Download All Genomes No edit summary
- 18:3318:33, 7 January 2010 diff hist +192 Download All Genomes No edit summary
- 18:3218:32, 7 January 2010 diff hist 0 File:RetrUcscGenomes.txt uploaded a new version of "Image:RetrUcscGenomes.txt": python scripts to download newest version of all 2bit genome files from UCSC with rsync current
- 18:3018:30, 7 January 2010 diff hist +75 N File:RetrUcscGenomes.txt python script to download the newest version of all UCSC genomes 2bit files
- 18:2918:29, 7 January 2010 diff hist +162 N Download All Genomes New page: This script will download the most current version for all genomes that can be rsynced from hgwdownload. It is written in python and is using the rsync program.
6 January 2010
- 19:5219:52, 6 January 2010 diff hist +65 Learn about the Browser →Install a copy of the browser on your own machine (Unix or Mac)
- 19:5119:51, 6 January 2010 diff hist +2 Learn about the Browser →Modify your own copy of the browser
- 19:5019:50, 6 January 2010 diff hist +80 Learn about the Browser →Modify your own copy of the browser
- 19:4519:45, 6 January 2010 diff hist +1,531 Blat-FAQ No edit summary
8 December 2009
- 09:5609:56, 8 December 2009 diff hist −1 Learn about the Browser →Making Of: How the UCSC genome annotations are created
- 09:5609:56, 8 December 2009 diff hist −4 Learn about the Browser →Making Of: How the UCSC genome annotations are created
- 09:5609:56, 8 December 2009 diff hist +249 Learn about the Browser →Making Of: How the UCSC genome annotations are created
