Uploads by Hiram
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 20:13, 22 March 2011 | 29mammalsConstrainedElements pi branchLength.bw (file) |  |
61.3 MB | gwUploadFile upload | 1 |
| 20:14, 22 March 2011 | 29mammalsConstrainedElements pi lods.bw (file) | |
61.15 MB | gwUploadFile upload | 1 |
| 20:13, 22 March 2011 | 29mammalsConstrainedElements omega lods.bw (file) | |
54.74 MB | gwUploadFile upload | 1 |
| 20:13, 22 March 2011 | 29mammalsConstrainedElements omega branchLength.bw (file) | |
54.38 MB | gwUploadFile upload | 1 |
| 20:42, 21 March 2011 | 29mammalsMotifInstances.bb (file) | |
38.25 MB | test upload | 1 |
| 17:42, 19 December 2008 | FrankJacobs181208.ppt (file) | |
29.16 MB | Frank Jacobs from Rudolf Magnus Institute of Neuroscience, University of Utrecht, The Netherlands, "Pitx3 outSMRTs Nurr1 in dopamine neuron terminal differentiation" | 1 |
| 18:22, 12 January 2016 | BME230 Winter 2016.ppt (file) | |
13.8 MB | (Hiram's presentation to BME230 Winter 2016 12 January - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion)) | 1 |
| 20:59, 4 February 2014 | BME230 Winter 2014.ppt (file) | |
13.79 MB | Hiram's presentation to BME230 Winter 2014 11 February - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) | 1 |
| 18:26, 26 January 2017 | BME230 Winter 2017.ppt (file) | |
12.98 MB | (Hiram's presentation to BME230 Winter 2016 12 January - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) | 1 |
| 02:21, 22 April 2024 | BME-110.2024-04-25.pptx (file) | |
12.97 MB | BME 110 25 April 2024 - UCSC browser introduction | 1 |
| 21:04, 18 January 2024 | BME-110.2024-01-18.pptx (file) | |
12.97 MB | 1 | |
| 17:00, 15 January 2023 | PAG30 2023-01-14.pptx (file) | |
9.85 MB | presentation at the Plant And Animal Genomes conference, San Diego January 2023 - "The UCSC Genome Browser" - an introduction to the browser, GenArk assembly hubs, building your own assembly hub and REST API interface. | 1 |
| 21:01, 6 October 2023 | BME-110.2023-10-06.pptx (file) | |
9.49 MB | 2 | |
| 18:52, 3 November 2023 | BME-18.2023-11-08.pptx (file) | |
8.83 MB | 1 | |
| 18:56, 4 November 2022 | BME-18.2022-11-04.pptx (file) | |
8.59 MB | 1 | |
| 22:14, 14 October 2009 | MonsatoIntroduction Oct2009.pdf (file) |  |
8.37 MB | Montsanto Introduction, Genecats 14 Oct 2009 | 1 |
| 17:05, 15 January 2023 | PAG30 2023-01-15.pptx (file) | |
7.55 MB | presentation at the 30th annual Plant and Animal Genomes conference - "Educational Resources in the UCSC Genome Browser" - introducing the http://genome.ucsc.edu/training/education/ resources. | 1 |
| 21:27, 25 January 2012 | BME230 Winter 2012.ppt (file) | |
7.31 MB | Hiram's presentation to BME230 Winter 2012 26 January 2012 - brief browser usage introduction, table browser intersection, plus information on source code but not part of the discussion | 1 |
| 22:38, 5 January 2010 | BME230 Winter 2010.ppt (file) | |
6.33 MB | Hiram Clawson, BME 230 lecture, 05,07 January 2009, introduction to the genome browser and programming with the kent source tree. | 1 |
| 17:28, 6 January 2011 | BME230 Winter 2011.ppt (file) | |
6.25 MB | Hiram Clawson, BME 230 lecture, 06 January 2011, introduction to the genome browser and programming with the kent source tree. | 1 |
| 00:11, 15 October 2022 | Mac background Catalina.png (file) |  |
6.2 MB | test upload function and thumbnail | 1 |
| 17:51, 8 January 2009 | BME230 Winter 2009.ppt (file) | |
5.88 MB | Hiram Clawson, BME 230 lecture, 08 January 2009, introduction to the genome browser and programming with the kent source tree. | 2 |
| 14:39, 23 July 2008 | ISMB2008 UCSC.ppt (file) | |
5.35 MB | ISMB 2008 Toronto - Intelligent Systems for Molecular Biology - presentation by Hiram Clawson. An example table browser intersection is performed with all the steps indicated. | 1 |
| 22:32, 8 January 2024 | CSHL GenomeInformatics 2023.pptx (file) | |
4.9 MB | Cold Spring Harbor - Genome Informatics meeting - poster - GenArk assembly resources | 1 |
| 22:18, 8 January 2024 | Sat Workshop2024.pptx (file) | |
4.45 MB | PAG 31 - 2024 - San Diego Plant and Animal Genomes - GenArk assembly resources | 1 |
| 18:39, 16 December 2008 | ISMB2007TripReportGenecats.ppt (file) | |
4.42 MB | Rachel Harte genecats presentation summary from ISMB 2007, Vienna Austria | 1 |
| 18:44, 17 December 2008 | Kent decodingEncode.ppt (file) | |
4.24 MB | Jim Kent at the Computational Systems Bioinformatics Conference, Stanford CA, 27 Aug 2008. Encode, the genome browser, the table browser, the source code, a variety of subjects are discussed. | 1 |
| 22:00, 6 August 2008 | ISMB2008 genecats summary.ppt (file) | |
3.8 MB | Hiram's summary of ISMB 2008 Toronto Ontario, July 2008 | 1 |
| 20:41, 21 March 2011 | 29mammalsExaptedElements.bb (file) | |
3.51 MB | test upload | 1 |
| 22:05, 17 December 2008 | Flicek 11 DEC 2008.pdf (file) | |
3.41 MB | Paul Flicek, EBI, presenting 1,000 genomes project status | 1 |
| 17:47, 16 December 2008 | Metcalf.Richardson.2008-10-15.pdf (file) | |
3.26 MB | Jake Metcalf and Sarah Richardson, Genecats presentation 15 Oct 2008, ethics discussion of Bruce T. Lahn controversy from U. Chicago. | 1 |
| 22:35, 6 June 2013 | AssemblyHubs BoG 2013.pdf (file) | |
3.06 MB | Assembly Hubs, Biology of Genomes meeting 2013 CSHL | 1 |
| 05:39, 9 June 2016 | BejeranoLab 2016-06-09.pptx (file) | |
2.92 MB | 2 | |
| 22:36, 6 June 2013 | AssemblyHubs BoG 2013.pptx (file) | |
2.72 MB | Assembly Hubs, Biology of Genomes meeting 2013 CSHL | 1 |
| 18:55, 17 December 2008 | MouseAnnotAndCCDSVisitReport041608.ppt (file) | |
2.34 MB | Rachel Harte summarizing Mouse Genome Annotation meeting and RefSeq/CCDS groups, NIH March 2008. | 1 |
| 18:21, 19 March 2010 | Hg17.UCSC GGM CombinedEpigeneticScore.bb (file) | |
2.02 MB | bigBed data for hg17 custom track: Epigenetic score - Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 17:28, 19 March 2010 | Hg18.UCSC GGM CombinedEpigeneticScore.bb (file) | |
2.02 MB | bigBed data for hg18 custom track: Combined epigenetic score (high scores correspond to bona fide CpG islands) | 1 |
| 18:22, 19 March 2010 | Hg17.UCSC GGM OptimizedScore.bb (file) | |
1.99 MB | bigBed data for hg17 custom track: Optimized score - Optimized score (high scores correspond to bona fide CpG islands | 1 |
| 17:28, 19 March 2010 | Hg18.UCSC GGM OptimizedScore.bb (file) | |
1.99 MB | bigBed data for hg18 custom track: Optimized score (high scores correspond to bona fide CpG islands) | 1 |
| 05:15, 12 July 2008 | CSHL 2003 Jim Kent.ppt (file) | |
1.52 MB | CSHL June 2003 "Evolution and the Santa Cruz Genome Browser" presentation by Jim Kent. Recent new functions in the genome browser, using the chain and net process to highlight evolutionary processes, a new rat genome assembly with 3-way human-mouse-rat mu | 1 |
| 18:48, 24 August 2011 | Sol GCBias GeneCats 2011-08-24.pdf (file) | |
1.4 MB | Sol Katzman presentation, genecats 24 Aug 2011 | 1 |
| 22:32, 20 May 2021 | VGP 2021-05-21.pptx (file) | |
1.24 MB | VGP meeting 2021-05-21 presentation, VGP assembly resources in the UCSC genome browser | 1 |
| 21:51, 5 October 2011 | XLDB 2011.pptx (file) | |
1.23 MB | bigBed/bigWig 5 minute presentation at XLDB conference, Stanford, 18 October 2011. | 2 |
| 18:27, 25 March 2009 | Teal Day 05.jpg (file) |  |
1.02 MB | Trying to recover a mysterious bogus file directory link | 1 |
| 18:23, 19 March 2010 | Hg17.UCSC GGM SensitiveCGIs.bb (file) | |
686 KB | bigBed data for hg17 custom track: CGIs (sensitive) - Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 17:30, 19 March 2010 | Hg18.UCSC GGM SensitiveCGIs.bb (file) | |
686 KB | bigBed data for custom track: Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.33 | 1 |
| 00:56, 19 May 2019 | NationalYoYoMuseum ChicoCA 50.jpg (file) |  |
553 KB | National YO YO Museum, Chico CA | 1 |
| 20:31, 21 March 2011 | 29mammalsNovelExons.bb (file) | |
411 KB | test upload | 1 |
| 18:19, 19 March 2010 | Hg17.UCSC GGM BalancedCGIs.bb (file) | |
389 KB | bigBed data for hg17 custom track: CGIs (balanced) Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
| 17:27, 19 March 2010 | Hg18.UCSC GGM BalancedCGIs.bb (file) | |
389 KB | bigBed data for custom track of Bona fide CpG islands, predicted to exhibit a combined epigenetic score above 0.5 | 1 |
