Uploads by Hiram
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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 20:36, 21 March 2011 | 29mammals2xHARs.bb (file) |  |
45 KB | test upload | 1 |
| 20:33, 21 March 2011 | 29mammals2xPARs.bb (file) | |
45 KB | test upload | 1 |
| 20:13, 22 March 2011 | 29mammalsConstrainedElements omega branchLength.bw (file) | |
54.38 MB | gwUploadFile upload | 1 |
| 20:13, 22 March 2011 | 29mammalsConstrainedElements omega lods.bw (file) | |
54.74 MB | gwUploadFile upload | 1 |
| 20:13, 22 March 2011 | 29mammalsConstrainedElements pi branchLength.bw (file) | |
61.3 MB | gwUploadFile upload | 1 |
| 20:14, 22 March 2011 | 29mammalsConstrainedElements pi lods.bw (file) | |
61.15 MB | gwUploadFile upload | 1 |
| 20:43, 21 March 2011 | 29mammalsConstraintStructure.bw (file) | |
219 KB | test upload | 1 |
| 20:41, 21 March 2011 | 29mammalsExaptedElements.bb (file) | |
3.51 MB | test upload | 1 |
| 20:42, 21 March 2011 | 29mammalsMotifInstances.bb (file) | |
38.25 MB | test upload | 1 |
| 20:31, 21 March 2011 | 29mammalsNovelExons.bb (file) | |
411 KB | test upload | 1 |
| 17:10, 19 March 2015 | AdjustSizes pl.txt (file) |  |
3 KB | chrom.sizes files are now expected to exist as created by selectedFasta.sh | 2 |
| 22:35, 6 June 2013 | AssemblyHubs BoG 2013.pdf (file) |  |
3.06 MB | Assembly Hubs, Biology of Genomes meeting 2013 CSHL | 1 |
| 22:36, 6 June 2013 | AssemblyHubs BoG 2013.pptx (file) | |
2.72 MB | Assembly Hubs, Biology of Genomes meeting 2013 CSHL | 1 |
| 21:54, 1 October 2018 | AwsAttachVolume.sh.txt (file) | |
4 KB | Script for AWS instance initialization to attach a data volume to a running instance. Used in the startParaHub.sh script upon starting the machine. | 1 |
| 21:01, 6 October 2023 | BME-110.2023-10-06.pptx (file) | |
9.49 MB | 2 | |
| 21:04, 18 January 2024 | BME-110.2024-01-18.pptx (file) | |
12.97 MB | 1 | |
| 02:21, 22 April 2024 | BME-110.2024-04-25.pptx (file) | |
12.97 MB | BME 110 25 April 2024 - UCSC browser introduction | 1 |
| 18:56, 4 November 2022 | BME-18.2022-11-04.pptx (file) | |
8.59 MB | 1 | |
| 18:52, 3 November 2023 | BME-18.2023-11-08.pptx (file) | |
8.83 MB | 1 | |
| 17:51, 8 January 2009 | BME230 Winter 2009.ppt (file) | |
5.88 MB | Hiram Clawson, BME 230 lecture, 08 January 2009, introduction to the genome browser and programming with the kent source tree. | 2 |
| 22:38, 5 January 2010 | BME230 Winter 2010.ppt (file) | |
6.33 MB | Hiram Clawson, BME 230 lecture, 05,07 January 2009, introduction to the genome browser and programming with the kent source tree. | 1 |
| 17:28, 6 January 2011 | BME230 Winter 2011.ppt (file) | |
6.25 MB | Hiram Clawson, BME 230 lecture, 06 January 2011, introduction to the genome browser and programming with the kent source tree. | 1 |
| 21:27, 25 January 2012 | BME230 Winter 2012.ppt (file) | |
7.31 MB | Hiram's presentation to BME230 Winter 2012 26 January 2012 - brief browser usage introduction, table browser intersection, plus information on source code but not part of the discussion | 1 |
| 20:59, 4 February 2014 | BME230 Winter 2014.ppt (file) | |
13.79 MB | Hiram's presentation to BME230 Winter 2014 11 February - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) | 1 |
| 18:22, 12 January 2016 | BME230 Winter 2016.ppt (file) | |
13.8 MB | (Hiram's presentation to BME230 Winter 2016 12 January - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion)) | 1 |
| 18:26, 26 January 2017 | BME230 Winter 2017.ppt (file) | |
12.98 MB | (Hiram's presentation to BME230 Winter 2016 12 January - brief browser usage introduction, assembly hub demonstration, table browser intersection, plus information on source code but not part of the discussion) | 1 |
| 17:32, 16 December 2008 | Baertsch-code-talk.ppt (file) | |
50 KB | BME230 lecture by Robert Baertsch, Winter 2008, 10 January 2008, genome browser introduction and kent source tree preview | 1 |
| 05:39, 9 June 2016 | BejeranoLab 2016-06-09.pptx (file) | |
2.92 MB | 2 | |
| 05:04, 13 March 2013 | BlatJob.csh.txt (file) | |
2 KB | script to use for the same species lift over procedure run.blat/ step 1 | 1 |
| 18:17, 2 June 2017 | Btrfs filesystem readWrite performance.png (file) |  |
120 KB | read/write performance test results for 'btrfs' filesystem | 1 |
| 05:15, 12 July 2008 | CSHL 2003 Jim Kent.ppt (file) | |
1.52 MB | CSHL June 2003 "Evolution and the Santa Cruz Genome Browser" presentation by Jim Kent. Recent new functions in the genome browser, using the chain and net process to highlight evolutionary processes, a new rat genome assembly with 3-way human-mouse-rat mu | 1 |
| 22:32, 8 January 2024 | CSHL GenomeInformatics 2023.pptx (file) | |
4.9 MB | Cold Spring Harbor - Genome Informatics meeting - poster - GenArk assembly resources | 1 |
| 20:39, 16 June 2010 | Ce2.altSplice.bb (file) | |
212 KB | Alternate splice sites from IntronWS120 file: altsplice.EX.html | 4 |
| 20:48, 16 June 2010 | Ce2Ws120AltSpliceCustomTrack.txt (file) | |
172 bytes | adding db=ce2 definition | 3 |
| 20:44, 16 June 2010 | Ce4.altSplice.bb (file) | |
213 KB | Alternate splice sites lifted from WS120 track to WS170 coordinates from IntronWS120 file: altsplice.EX.html) | 1 |
| 20:47, 16 June 2010 | Ce4Ws140AltSpliceCustomTrack.txt (file) | |
194 bytes | adding db=ce4 definition | 2 |
| 20:55, 16 June 2010 | Ce6.altSplice.bb (file) | |
213 KB | Alternate splice sites lifted from WS170 track to WS190 coordinates from IntronWS120 file: altsplice.EX.html) | 1 |
| 20:57, 16 June 2010 | Ce6Ws190AltSpliceCustomTrack.txt (file) | |
172 bytes | the custom track reference track line for ce6/WS190 alternative splice track | 1 |
| 18:00, 11 June 2007 | CleanHgCentral pl.txt (file) | |
2 KB | PERL cleaner script for userDb and sessionDb tables in hgcentral | 1 |
| 06:43, 13 July 2008 | CompBioOct2000 Jim Kent.ppt (file) | |
45 KB | Description of the genome browser software architecture, the early days. Jim Kent | 1 |
| 23:44, 25 January 2011 | ConstructLiftFile pl.txt (file) | |
1 KB | Given a partition list from partitionSequence.pl and a chrom.sizes file, this perl script will construct a lift file to be used to lift psl query and target results from those partitions after a lastz alignment. | 1 |
| 17:17, 19 March 2015 | Create scores file control.txt (file) | |
653 bytes | Parameters from Bob Harris for lastz tuning procedure | 1 |
| 16:33, 28 June 2022 | DanRer10.grcIncidentDb.bb (file) | |
126 KB | gwUploadFile upload | 127 |
| 16:33, 28 June 2022 | DanRer11.grcIncidentDb.bb (file) | |
202 KB | gwUploadFile upload | 17 |
| 16:33, 28 June 2022 | DanRer7.grcIncidentDb.bb (file) | |
111 KB | gwUploadFile upload | 336 |
| 16:44, 27 April 2012 | DanRer7.ncbiIncidentDb.bb (file) | |
168 KB | gwUploadFile upload | 27 |
| 22:47, 13 May 2008 | EmbedURL php.txt (file) | |
3 KB | UCSC modified EmbedURL extension code php file. Adds scrolling and frameborder options, and defaults width and height to 100% and 500 | 1 |
| 17:14, 19 March 2015 | Expand scores file py.txt (file) | |
4 KB | Script created by Bob Harris for lastz tuning operations | 1 |
| 22:45, 31 May 2017 | Ext4 fs readWrite performance.png (file) |  |
106 KB | writing over 7 million files into one directory to see how performance degrades. | 1 |
| 16:43, 24 June 2011 | ExtractRepeats.txt (file) | |
2 KB | Small perl script used to extract lineage specific repeats from RepeatMasker .out files | 1 |
