UCSC Multiple Alignments: Difference between revisions

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<UL>
<LI>Lizard 7-way [[AnoCar2 conservation alignment]] May 2011</LI>
<LI> Mouse 35-way [[Mm39 35-way conservation alignment]] Jan 2021, [[Mm39 35-way conservation lastz parameters|lastz parameters]], [[Mm39 35-way Genome size statistics|size statistics]]</LI>
<LI> Zebrafish 12-way [[DanRer10 12-way conservation alignment]] Mar 2020, [[DanRer10 12-way conservation lastz parameters|lastz parameters]], [[DanRer10 12-way Genome size statistics|size statistics]]</LI>
<LI> C. elegans 135-way [[Ce11 135-way conservation alignment]] Dec 2018, [[Ce11 135-way conservation lastz parameters|lastz parameters]], [[Ce11 135-way Genome size statistics|size statistics]]</LI>
<LI> D. melanogaster 124-way [[Dm6 124-way conservation alignment]] Dec 2018, [[Dm6 124-way conservation lastz parameters|lastz parameters]], [[Dm6 124-way Genome size statistics|size statistics]]</LI>
<LI> Chicken 77-way [[GalGal6 77-way conservation alignment]] Dec 2018, [[GalGal6 77-way conservation lastz parameters|lastz parameters]], [[GalGal6 77-way Genome size statistics|size statistics]]</LI>
<LI> Mouse lemur 3-way [[MicMur3 3-way conservation alignment]] Jun 2018, [[MicMur3 3-way conservation lastz parameters|lastz parameters]], [[MicMur3 3-way Genome size statistics|size statistics]]</LI>
<LI> Bushbaby 3-way [[OtoGar3 3-way conservation alignment]] Feb 2018, [[OtoGar3 3-way conservation lastz parameters|lastz parameters]], [[OtoGar3 3-way Genome size statistics|size statistics]]</LI>
<LI> Guinea pig 6-way [[CavPor3 6-way conservation alignment]] Dec 2017, [[CavPor3 6-way conservation lastz parameters|lastz parameters]], [[CavPor3 6-way Genome size statistics|size statistics]]</LI>
<LI> Human 5-way (with tupChi1) [[Hg38 5-way conservation alignment]] Dec 2017, [[Hg38 5-way conservation lastz parameters|lastz parameters]], [[Hg38 5-way Genome size statistics|size statistics]]</LI>
<LI> Malayan flying lemur 6-way [[GalVar1 6-way conservation alignment]] Dec 2017, [[GalVar1 6-way conservation lastz parameters|lastz parameters]], [[GalVar1 6-way Genome size statistics|size statistics]]</LI>
<LI> Chinese tree shrew 5-way [[TupChi1 5-way conservation alignment]] Ded 2017, [[TupChi1 5-way conservation lastz parameters|lastz parameters]], [[TupChi1 5-way Genome size statistics|size statistics]]</LI>
<LI> Human 30-way [[Hg38 30-way conservation alignment]] November 2017, [[Hg38 30-way conservation lastz parameters|lastz parameters]], [[Hg38 30-way Genome size statistics|size statistics]]</LI>
<LI> Human 27-way [[Hg38 27-way conservation alignment]] October 2017, [[Hg38 27-way conservation lastz parameters|lastz parameters]], [[Hg38 27-way Genome size statistics|size statistics]]</LI>
<LI> X. tropicalis 11-way [[XenTro9 11-way conservation alignment]] May 2017, [[XenTro9 11-way conservation lastz parameters|lastz parameters]], [[XenTro9 11-way Genome size statistics|size statistics]]</LI>
<LI> Malayan flying lemur 4-way (with tupChi1) [[GalVar1 4-way conservation alignment]] Apr 2017, [[GalVar1 4-way conservation lastz parameters|lastz parameters]], [[GalVar1 4-way Genome size statistics|size statistics]]</LI>
<LI> Mouse 4-way (with tupChi1) [[Mm10 4-way conservation alignment]] Apr 2017, [[Mm10 4-way conservation lastz parameters|lastz parameters]], [[Mm10 4-way Genome size statistics|size statistics]]</LI>
<LI> Human 4-way (with tupChi1) [[Hg38 4-way conservation alignment]] Apr 2017, [[Hg38 4-way conservation lastz parameters|lastz parameters]], [[Hg38 4-way Genome size statistics|size statistics]]</LI>
<LI> Chinese tree shrew 4-way [[TupChi1 4-way conservation alignment]] Mar 2017, [[TupChi1 4-way conservation lastz parameters|lastz parameters]], [[TupChi1 4-way Genome size statistics|size statistics]]</LI>
<LI> Rat 20-way [[Rn6 20-way conservation alignment]] Jan 2017, [[Rn6 20-way conservation lastz parameters|lastz parameters]], [[Rn6 20-way Genome size statistics|size statistics]]</LI>
<LI> Malayan flying lemur 5-way [[GalVar1 5-way conservation alignment]] May 2016, [[GalVar1 5-way conservation lastz parameters|lastz parameters]], [[GalVar1 5-way Genome size statistics|size statistics]]</LI>
<LI> Guinea pig 5-way [[CavPor3 5-way conservation alignment]] May 2016, [[CavPor3 5-way conservation lastz parameters|lastz parameters]], [[CavPor3 5-way Genome size statistics|size statistics]]</LI>
<LI> C. elegans 26-way [[Ce11 26-way conservation alignment]] Jul. 2015, [[Ce11 26-way conservation lastz parameters|lastz parameters]], [[Ce11 26-way Genome size statistics|size statistics]]</LI>
<LI> Tarsier 20-way [[TarSyr2 20-way conservation alignment]] Apr. 2015, [[TarSyr2 20-way conservation lastz parameters|lastz parameters]], [[TarSyr2 20-way Genome size statistics|size statistics]]</LI>
<LI> Human 20-way [[Hg38 20-way conservation alignment]] Apr. 2015, [[Hg38 20-way conservation lastz parameters|lastz parameters]], [[Hg38 20-way Genome size statistics|size statistics]]</LI>
<LI>Human 100-way [[Hg38 100-way conservation alignment]] Apr. 2015, [[Hg38 100-way conservation lastz parameters|lastz parameters]], [[Hg38 100-way Genome size statistics|size statistics]]</LI>
<LI> Human 17-way [[Hg38 17-way conservation alignment]] Dec. 2014, [[Hg38 17-way conservation lastz parameters|lastz parameters]], [[Hg38 17-way Genome size statistics|size statistics]]</LI>
<LI> Tarsier 17-way [[TarSyr2 17-way conservation alignment]] Dec. 2014, [[TarSyr2 17-way conservation lastz parameters|lastz parameters]], [[TarSyr2 17-way Genome size statistics|size statistics]]</LI>
<LI> D. melanogaster 27-way [[Dm6 27-way conservation alignment]] Nov. 2014, [[Dm6 27-way conservation lastz parameters|lastz parameters]], [[Dm6 27-way Genome size statistics|size statistics]]</LI>
<LI> Human 7-way [[Hg38 7-way conservation alignment]] Jun. 2014, [[Hg38 7-way conservation lastz parameters|lastz parameters]], [[Hg38 7-way Genome size statistics|size statistics]]</LI>
<LI> Rat 13-way [[Rn5 13-way conservation alignment]] Jun. 2014, [[Rn5 13-way conservation lastz parameters|lastz parameters]], [[Rn5 13-way Genome size statistics|size statistics]]</LI>
<LI>Human 100-way [[Hg19 100way conservation alignment]] Sep. 2013, [[Hg19 100way conservation lastz parameters|lastz parameters]], [[Hg19 100way Genome size statistics|size statistics]]</LI>
<LI>Lamprey 7-way [[PetMar2 conservation alignment]] Nov. 2012, [[PetMar2 conservation lastz parameters|lastz parameters]], [[PetMar2 Genome size statistics|size statistics]]</LI>
<LI>Medium ground finch 7-way [[GeoFor1 conservation alignment]] Aug. 2012, [[GeoFor1 conservation lastz parameters|lastz parameters]], [[GeoFor1 Genome size statistics|size statistics]]</LI>
<LI>Mouse 60-way [[Mm10 conservation alignment]] Apr. 2012, [[Mm10 conservation lastz parameters|lastz parameters]], [[Mm10 Genome size statistics|size statistics]]</LI>
<LI>Fugu 8-way [[Fr3 conservation alignment]] Feb. 2012, [[Fr3 conservation lastz parameters|lastz parameters]], [[Fr3 Genome size statistics|size statistics]]</LI>
<LI>Gorilla 11-way [[GorGor3 conservation alignment]] May 2011, [[GorGor3 conservation lastz parameters|lastz parameters]], [[GorGor3 Genome size statistics|size statistics]]</LI>
<LI>X. tropicalis 9-way [[XenTro3 conservation alignment]] Sept. 2011, [[XenTro3 conservation lastz parameters|lastz parameters]], [[XenTro3 Genome size statistics|size statistics]]</LI>
<LI>C. elegans 9-way WS220 [[Ce10 conservation alignment]] June 2011, [[Ce10 conservation lastz parameters|lastz parameters]], [[Ce10 Genome size statistics|size statistics]]</LI>
<LI>Lizard 7-way [[AnoCar2 conservation alignment]] May 2011, [[AnoCar2 conservation lastz parameters|lastz parameters]], [[AnoCar2 Genome size statistics|size statistics]]</LI>
<LI>Chimp 8-way [[PanTro3 conservation alignment]], May 2011, [[PanTro3 conservation lastz parameters|lastz parameters]], [[PanTro3 Genome size statistics|size statistics]]</LI>
<LI>Marmoset 13-way [[CalJac3 conservation alignment]], May 2011, [[CalJac3 conservation lastz parameters|lastz parameters]], [[Marmoset calJac3 13-way size statistics|size statistics]]</LI>
<LI>Cat 6-way [[FelCat4 conservation alignment]], Jan. 2011, [[FelCat4 conservation lastz parameters|lastz parameters]], [[FelCat4 Genome size statistics|size statistics]]</LI>
<LI>Zebrafish 8-way [[DanRer7 conservation alignment]], Jan. 2011, [[DanRer7 conservation lastz parameters|lastz parameters]], [[DanRer7 Genome size statistics|size statistics]]</LI>
<LI>Human 46-way [[Hg19 conservation alignment]] Nov. 2010, [[Hg19 conservation lastz parameters|lastz parameters]], [[Hg19 Genome size statistics|size statistics]], [[Human/hg19/GRCh37_46-way_multiple_alignment|errata]]</LI>
<LI>C. elegans 10-way [[Ce9 conservation alignment]], Oct. 2010, [[Ce9 conservation lastz parameters|lastz parameters]], [[Ce9 Genome size statistics|size statistics]]</LI>
<LI>Mouse 30-way [[Mm9_multiple_alignment]] Aug. 2009
<LI>Human 44-way [[Hg18 44way alignment|Hg18 conservation alignment]] Dec. 2008, [[Hg18 44way blastz parameters|blastz parameters]], [[Genome size statistics|size statistics]]</LI>
<LI>Horse 6-way [[EquCab2 conservation alignment]], Dec. 2008, [[EquCab2 conservation lastz parameters|lastz parameters]], [[EquCab2 Genome size statistics|size statistics]]</LI>
<LI>Lamprey 6-way [[PetMar1 conservation alignment]] May 2008, [[PetMar1 conservation lastz parameters|lastz parameters]], [[PetMar1 Genome size statistics|size statistics]]</LI>
<LI>Orangutan 8-way [[PonAbe2 conservation alignment]], Dec. 2007, [[PonAbe2 conservation lastz parameters|blastz parameters]], [[PonAbe2 Genome size statistics|size statistics]]</LI>
<LI>Platypus 6-way [[OrnAna1 conservation alignment]], May 2007, [[OrnAna1 conservation lastz parameters|blastz parameters]], [[OrnAna1 Genome size statistics|size statistics]]</LI>
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</UL>

Latest revision as of 00:58, 5 January 2021